Figure 1

Illustrative UCSC Genome Browser (http://genome.ucsc.edu/) screen capture showing (from top to bottom) chromosome position, read depth from Flow Sort (FS) sequence data, bases covered by high-quality genotype calls in FS sequence data, read depth from Solution Hybrid Selection (SHS) sequence data, bases covered by high-quality genotype calls in SHS sequence data, read depth from Solution Hybrid Selection – Paired End (SHS-PE) sequence data, bases covered by high-quality genotype calls in SHS-PE sequence data, and the UCSC gene models. Read depth axes show 0–60 reads (FS) and 0–215 reads (SHS).