Table 1 Comparison of LCE3C_LCE3B-del aCGH values with LCE3C_LCE3B-del and rs4112788 genotypes in 13 world populations
LCE3C/LCE3B genotype frequency (%) | LCE3C/LCE3B allele frequency (%) | rs4112788 genotype frequency (%) | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Geographic Region | Population (ID) | aCGH intensity values (respect to YRI*) | +/+ | +/− | −/− | + | − | AA | AG | GG |
Sub-Saharan Africans | Pygmies* (PYG) | −0.13 | 38.6 | 52.3 | 9.1 | 64.77 | 35.23 | 0 | 13.64 | 86.36 |
Yoruba (YRI) | 0* | 36.4 | 59.1 | 4.5 | 65.91 | 34.09 | 0 | 28.57 | 71.43 | |
Bantu (BAN) | −0.03 | 44.4 | 55.6 | - | 72.22 | 27.78 | 0 | 50.00 | 50.00 | |
North-Africans/Middle East | Mozabite*# (ALG) | −0.3 | 11.5 | 42.3 | 46.2 | 32.69 | 67.31 | 0 | 21.43 | 78.57 |
Bedouin* (BED) | −0.21 | 19.4 | 55.6 | 25 | 47.22 | 52.78 | 14.63 | 53.66 | 31.71 | |
Europians | French (FRA) | −0.2 | 22.2 | 37 | 40.7 | 40.74 | 59.26 | 16.67 | 41.67 | 41.67 |
Southern Asians | Brahui# (BRA) | −0.31 | 22.7 | 40.9 | 36.4 | 43.18 | 56.82 | 21.74 | 43.48 | 34.78 |
Hazara (HAZ) | −0.15 | 58.9 | 41.1 | 0 | 79.41 | 20.59 | 43.75 | 56.25 | 0 | |
Eastern Asians | Han# (CHB) | −0.26 | 14.7 | 47.1 | 38.2 | 38.24 | 61.76 | 0 | 52.17 | 47.83 |
Yakut* (YAK) | −0.12 | 63.6 | 27.3 | 9.1 | 77.27 | 22.73 | 50.00 | 31.82 | 18.18 | |
Oceania | Papuan-Melanesian (OCE) | −0.18 | 31.4 | 37.1 | 31.4 | 50.00 | 50.00 | 26.47 | 41.18 | 32.35 |
Americans | PIMA# | −0.67 | 9.1 | 31.9 | 59.1 | 25.00 | 75.00 | 9.09 | 36.36 | 54.55 |
MAYA# | −0.27 | 9.5 | 57.1 | 33.3 | 38.10 | 61.90 | 7.14 | 57.14 | 35.71 | |