Table 1 Summary of significant (−log 10 p ≥ 3) marker-trait associations identified by genome-wide association scans where a. EIGENSTRAT analysis. b. Kinship analysis
From: Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.)
Peak marker name | Chromosome position (cM) | GWA statistics | SNP diversity | Reference cultivars | |||||
|---|---|---|---|---|---|---|---|---|---|
|  |  |  | -log10(p) | Effect* | (s.e.) | Alleles | MAF** | ‘Tokak’ | ‘Intro’ |
a - Foradada | Â | Â | Â | Â | Â | Â | Â | Â | Â |
11_21067 | 1H | 1.5 | 3.36 | −0.20 | 0.06 | G/A | A (0.293) | G/G | G/G |
11_10216 | 2H | 26.5 | 3.4 | −0.21 | 0.06 | A/C | C (0.467) | A/A | A/A |
11_10498 | 2H | 49.1 | 3.08 | −0.36 | 0.11 | G/A | A (0.207) | G/G | G/G |
11_20366 | 2H | 128.3 | 4.23 | +0.31 | 0.08 | A/G | G (0.402) | A/A | G/G |
11_10565 | 3H | 19.1 | 3.13 | −0.27 | 0.08 | A/G | G (0.247) | A/A | A/A |
11_20168 | 3H | 114 | 3.77 | +0.44 | 0.12 | G/A | A (0.103) | G/G | G/G |
11_11019 | 4H | 123.3 | 3.93 | −0.35 | 0.09 | A/G | G (0.125) | A/A | A/A |
11_11048 | 5H | 29.9 | 3.12 | −0.28 | 0.08 | T/A | A (0.147) | T/T | A/A |
11_20320 | 5H | 108.2 | 5.65 | −0.31 | 0.07 | A/C | C (0.310) | A/A | A/A |
11_10817 | 6H | 45.4 | 3.29 | −0.24 | 0.07 | C/A | A (0.473) | A/A | C/C |
11_10013 | 6H | 45.4 | 4.29 | −0.40 | 0.1 | A/G | G (0.212) | A/A | A/A |
11_20531 | 6H | 97.4 | 3.9 | +0.34 | 0.09 | G/A | A (0.136) | G/G | A/A |
11_11111 | 6H | 128.5 | 4.88 | +0.35 | 0.08 | A/G | G (0.332) | A/A | G/G |
a -Fiorenzuola | Â | Â | Â | Â | Â | Â | Â | Â | Â |
11_21126 | 1H | 73.9 | 3.25 | −0.20 | 0.06 | G/C | C(0.152) | G/G | C/C |
11_10919 | 2H | 39.1 | 4.29 | −0.21 | 0.05 | G/A | A(0.462) | G/G | G/G |
11_11522 | 2H | 53.5 | 4.32 | −0.27 | 0.07 | A/G | G(0.185) | A/A | A/A |
11_21388 | 2H | 55 | 7.51 | −0.40 | 0.07 | A/C | C(0.141) | A/A | A/A |
11_20366 | 2H | 128.3 | 3.29 | +0.22 | 0.06 | A/G | G(0.402) | A/A | G/G |
11_21130 | 4H | 116.9 | 3.02 | −0.24 | 0.07 | C/A | A(0.158) | C/C | C/C |
11_20320 | 5H | 108.2 | 6.1 | −0.26 | 0.05 | A/C | C(0.310) | A/A | A/A |
11_21168 | 5H | 109.6 | 3.69 | −0.21 | 0.06 | G/A | A(0.440) | G/G | G/G |
11_21271 | 6H | 105.6 | 3.48 | +0.25 | 0.07 | C/A | A(0.321) | A/A | C/C |
b - Foradada | Â | Â | Â | Â | Â | Â | Â | Â | Â |
11_21192 | 1H | 88.2 | 3.31 | −0.27 | 0.08 | A/T | T (0.277) | A/A | A/A |
11_21187 | 2H | 29.2 | 3.08 | −0.33 | 0.1 | G/A | A (0.141) | G/G | G/G |
11_10565 | 3H | 19.1 | 3.65 | −0.32 | 0.09 | A/G | G (0.247) | A/A | A/A |
11_11019 | 4H | 123.3 | 3.68 | −0.38 | 0.1 | A/G | G (0.125) | A/A | A/A |
11_20320 | 5H | 108.2 | 4.48 | −0.30 | 0.07 | A/C | C (0.310) | A/A | A/A |
11_10013 | 6H | 45.4 | 3.4 | −0.39 | 0.11 | A/G | G (0.212) | A/A | A/A |
b -Fiorenzuola | Â | Â | Â | Â | Â | Â | Â | Â | Â |
11_10919 | 2H | 39.1 | 3.33 | −0.19 | 0.06 | G/A | A(0.462) | G/G | G/G |
11_11522 | 2H | 53.5 | 3.37 | −0.26 | 0.07 | A/G | G(0.185) | A/A | A/A |
11_21388 | 2H | 55 | 6.26 | −0.40 | 0.08 | A/C | C(0.141) | A/A | A/A |
11_20320 | 5H | 108.2 | 4.69 | −0.25 | 0.06 | A/C | C(0.310) | A/A | A/A |