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Table 1 Hsp90 genes families in Arabidopsis , Populus , and rice

From: Genome-wide analysis of the Populus Hsp90 gene family reveals differential expression patterns, localization, and heat stress responses

Gene name Locus Genomic position Mol. Wt. (kDa), Length (aa), pI Gene length, ORF, introns POSRT predictions*
AtHsp90-1 At5g52640 Chr5:21352542-21355147 (+) 81.18, 705, 4.95 2606, 2118, 3 N: 6, C: 5, Ch: 2
AtHsp90-2 At5g56030 Chr5:22686923-22689433 (+) 80.06, 699, 4.95 2511, 2187, 2 C: 11, P: 2
AtHsp90-3 At5g56010 Chr5:22681410-22683911 (+) 80.05, 699, 4.95 2502, 2100, 2 C: 9, P: 2, N: 1, M: 1
AtHsp90-4 At5g56000 Chr5:22677602-22680067 (-) 80.14, 699, 4.96 2466, 2100, 2 C: 9, P: 4
AtHsp90-5 At2g04030 Chr2:1281983-1285909 (+) 88.66, 780, 4.93 3927, 2343, 18 Ch: 12, N: 1
AtHsp90-6 At3g07770 Chr3:2479611-2483970 (+) 90.57, 799, 5.26 4360, 2400, 19 M: 9.5, Ch_M: 6.5, Ch: 2.5
AtHsp90-7 At4g24190 Chr4:12551902-12555851 (-) 94.2, 823, 4.94 3950, 2472, 14 E.R.: 7, V: 4, N: 1
PtHsp90-1a Potri.004G073600 Chr04: 6143799 - 6146941(-) 80.72, 703, 5 2566, 2112, 3 C: 7, N: 3, P: 2, M: 1
PtHsp90-1b Potri.017G146600 Chr17: 15369800 - 15373207(+) 80.75, 703, 4.98 2696, 2112, 3 C: 8, N: 2, P: 2, M: 1
PtHsp90-2 Potri.001G466000 Chr01: 49936276 - 49939430(+) 80.03, 699, 4.95 2767, 2100, 2 C: 6, P: 2, E.R.: 2, Ch: 1, N: 1, M: 1
PtHsp90-3 Potri.016G003400 Chr16: 167702 - 171110(+) 79.95, 698, 4.94 2906, 2097, 3 N: 7, C: 5, Ch: 2
PtHsp90-4a Potri.001G286700 Chr01: 29295547 - 29298729(+) 80.86, 706, 4.88 2734, 2121, 2 C: 7, N: 2, P: 2, Ch: 1, M: 1
PtHsp90-4b Potri.006G002800 Chr06: 219117 - 222439(+) 80.01, 699, 4.91 2734, 2100, 2 N: 4, C: 4, P: 3, Ch: 1, V: 1
PtHsp90-5a Potri.008G112700 Chr08: 7190800 - 7197203(+) 90.16, 791, 4.92 5884, 2376, 17 Ch: 10, N: 2, P: 1
PtHsp90-5b Potri.010G136800 Chr10: 15004039 - 15010595(-) 90.15, 793, 4.96 5723, 2382, 17 Ch: 13
PtHsp90-6 Potri.014G164900 Chr14: 13043761 - 13049852(-) 82.95, 723, 5.53 4850, 2172, 13 M: 7.5, Ch_M: 7, Ch: 5.5
PtHsp90-7 Potri.005G241100 Chr05: 24712685 - 24717968(-) 94.05, 823, 4.85 4926, 2472, 14 E.R.: 5, V: 5, P: 2, Ch: 1
OsHsp90-1 LOC_Os04g01740 Chr4: 483241 - 486065 (+) 80.25, 703, 5.04 2353, 2112, 2 C: 11, Ch: 1, P: 1
OsHsp90-2 LOC_Os08g39140 Chr8: 24719086 - 24723553 (-) 80.19, 699, 4.99 4002, 2100, 2 C: 8, P: 2, Ch: 1, N: 1, M: 1
OsHsp90-3 LOC_Os09g30412 Chr9: 18514572 - 18518316 (-) 80.2, 699, 4.97 3232, 2100, 2 N: 7, C: 4, Ch: 2
OsHsp90-4 LOC_Os09g30418 Chr9: 18535746 - 18541109 (-) 94.2, 830, 5.15 5364, 2493, 3 N: 8, C: 3, Ch: 1, P: 1
OsHsp90-5a LOC_Os08g38086 Chr8: 24124838 - 24129488 (-) 85.85, 761, 4.97 4285, 2286, 19 Ch: 12.5, Ch_M: 7
OsHsp90-5b LOC_Os09g29840 Chr9: 18150618 - 18155512 (-) 89.22, 791, 5.03 4359, 2376, 18 Ch: 12.5, Ch_M: 7
OsHsp90-6 LOC_Os12g32986 Chr12: 19921576 - 19927766 (-) 91.48, 811, 5.21 5680, 2436, 19 Ch: 12, M: 1
OsHsp90-7 LOC_Os06g50300 Chr6: 30444411 - 30450497 (-) 93.04, 812, 4.89 5669, 2439, 14 E.R.: 5, V: 5, P: 2, Ch: 1
  1. Gene loci are obtained from the Phytozome website (http://www.phytozome.net). A complete list of the coding sequences (CDS), deduced amino acid sequences and genomic DNA sequences is available in Additional file 2.
  2. *PSORT predictions: P (plasma membrane), V (vacuolar membrane), C (cytosol), Ch (chloroplast), N (nuclear), E.R. (endoplasmic reticulum), M (mitochondrion). The numbers indicate the number of nearest neighbors to the query which localize to each site.
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BMC Genomics

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