Comparative genomics of metabolic capacities of regulons controlled by cis-regulatory RNA motifs in bacteria

BMC Genomics

Table 2 Statistics of RNA sites, regulogs and target genes in the analyzed genomes

Phylum / subdivision	Taxonomic group	Genomes	Sites	Sites per genome*	Regulogs	Target genes	Genes per genome*
Firmicutes	Lactobacillaceae	15	581	39	39	1074	72
	Streptococcaceae	15	400	27	29	881	59
	Bacillales	11	668	61	39	1525	139
	Staphylococcaceae	7	288	41	30	647	92
	Clostridiaceae	20	958	48	40	2036	102
Bacteroidae	Bacteroidaceae	11	84	7.6	2	334	30
Chlorobia	Chlorobiales	11	73	6.6	6	263	24
Actinobacteria	Corynebacteriaceae	8	80	10	13	194	24
	Mycobacteriaceae	9	131	15	12	247	27
Cyanobacteria	Cyanobacteria	14	86	6.1	11	150	11
Chloroflexi	Chloroflexi	5	98	20	17	300	60
Deinococcus-Thermus	Deinococcus-Thermus	5	64	13	13	221	44
Thermotogae	Thermotogales	11	88	8.0	13	379	34
Proteobacteria/Delta	Desulfovibrionales	10	78	7.8	9	159	16
Proteobacteria/Alpha	Caulobacterales	4	36	9.0	8	70	18
	Rhodobacterales	15	182	12	13	443	30
	Rhizobiales	15	221	15	11	486	32
Proteobacteria/Beta	Burkholderia	8	127	16	9	319	40
	Ralstonia	6	66	11	10	173	29
Proteobacteria/Gamma	Enterobacteriales	12	188	16	18	601	50
	Pasteurellales	9	112	12	11	258	29
	Vibrionales	10	202	20	17	533	53
	Pseudomonadaceae	8	92	12	9	248	31
	Shewanellaceae	16	291	18	15	910	57
TOTAL:	24 lineages	255	5204	20	394	12451	46

*Average numbers of RNA sites and regulated genes per genome were calculated for each studied taxonomic group; the average numbers for all lineages are given in the last line.

ISSN: 1471-2164