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Table 2 Enriched GO terms identified with GeneCodis

From: The regulatory role of Pcf11-similar-4 (PCFS4) in Arabidopsis development by genome-wide physical interactions with target loci

GO ID

Ontology#

Term

Num. of

p-value

FDR*

Genes

GO:0016049

BP

cell growth

7

3.4E-06

3.5E-04

GO:0005086

MF

ARF guanyl-nucleotide exchange factor activity

4

5.5E-06

6.4E-04

GO:0005488

MF

binding

36

6.3E-05

2.4E-03

GO:0009640

BP

photomorphogenesis

7

1.5E-04

5.4E-03

GO:0009555

BP

pollen development

11

2.5E-04

6.4E-03

GO:0016192

BP

vesicle-mediated transport

10

6.7E-04

1.4E-02

GO:0042752

BP

regulation of circadian rhythm

4

7.1E-04

1.2E-02

GO:0004553

MF

hydrolyzing O-glycosyl compounds

16

7.7E-04

1.5E-02

GO:0009793

BP

embryo development ending in seed dormancy

19

1.0E-03

1.3E-02

GO:0004672

MF

protein kinase activity

28

1.1E-03

1.9E-02

GO:0080167

BP

response to karrikin

10

1.3E-03

1.4E-02

GO:0050790

BP

regulation of catalytic activity

4

1.4E-03

1.2E-02

GO:0009561

BP

megagametogenesis

4

1.4E-03

1.2E-02

GO:0003700

MF

sequence-specific DNA binding transcription factor activity

61

2.1E-03

3.1E-02

GO:0005524

MF

ATP binding

52

2.1E-03

2.8E-02

GO:0003677

MF

DNA binding

53

2.9E-03

3.4E-02

GO:0008270

MF

zinc ion binding

48

3.7E-03

3.6E-02

GO:0050832

BP

defense response to fungus

9

5.4E-03

4.3E-02

GO:0009832

BP

plant-type cell wall biogenesis

4

5.6E-03

4.1E-02

GO:0015031

BP

protein transport

8

6.4E-03

4.4E-02

GO:0004871

MF

signal transducer activity

8

6.4E-03

4.9E-02

GO:0044237

BP

cellular metabolic process

4

7.9E-03

4.9E-02

GO:0000226

BP

microtubule cytoskeleton organization

3

8.1E-03

4.7E-02

  1. Note: #: BP, Biological Process; MF, Molecular Function.
  2. *: FDR, False Discovery Rate.