Figure 2
From: L_RNA_scaffolder: scaffolding genomes with transcripts
Comparison of transcript coverage in three zebrafish assemblies. Initial contigs, the zebrafish clones and WGS sequences; L_RNA_scaffolder, the L_RNA_scaffolder results; Zv_9, the Zv_9 assembly. Cleaned transcripts are aligned to the three zebrafish genomes using BLAT. Identity cutoff is set as 90% and sequence coverage threshold as 90%.