Table 2 Scaffolding the human genome
From: L_RNA_scaffolder: scaffolding genomes with transcripts
Software | Library | Scaffold number | N50 (kb) |
|---|---|---|---|
SOAPdenovo | 2Â kb | 27,390 | 142 |
5Â kb | 22,691 | 162 | |
10Â kb | 21,444 | 170 | |
35Â kb | 10,266 | 754 | |
SOPRA | 2Â kb | 23,653 | 158 |
5Â kb | 15,476 | 266 | |
10Â kb | 27,142 | 143 | |
35Â kb | unfinished, cause unclear | ||
Opera | 2Â kb | 24,484 | 155 |
5Â kb | 16,207 | 261 | |
10Â kb | 27,412 | 142 | |
35Â kb | 3,884 | 3,726 | |
MIP scaffolder | 2Â kb | 27,247 | 142 |
5Â kb | 26,804 | 144 | |
10Â kb | 8,134 | 716 | |
35Â kb | 13,295 | 329 | |
SSPACE | 2Â kb | 27,391 | 142 |
5Â kb | 19,528 | 180 | |
10Â kb | 19,790 | 181 | |
35Â kb | 5,983 | 1,457 | |
L_RNA_scaffolder | Â | 15,792 | 283 |