Table 1 Statistics for the filtering and mapping of reads
From: Transcriptomic characterization of cold acclimation in larval zebrafish
Sample name | ck1 | ck2 | ck3 | cold1 | cold2 | cold3 |
|---|---|---|---|---|---|---|
Total reads (M) | 19.80x2 | 24.72x2 | 19.48x2 | 26.51x2 | 21.07x2 | 24.57x2 |
Good reads (M) | 38.05 | 47.76 | 37.62 | 50.92 | 40.74 | 47.56 |
% Good reads | 96.09 | 96.61 | 96.58 | 96.06 | 96.67 | 96.80 |
Processed reads (M) | 37.52 | 47.22 | 37.18 | 50.20 | 40.25 | 46.95 |
Mapped reads (M) | 34.85 | 43. 40 | 34.38 | 46.06 | 37.26 | 43.34 |
% Mapped | 92.89 | 91.90 | 92.47 | 91.77 | 92.56 | 92.33 |
Total alignment (M) | 45.55 | 56.44 | 45.57 | 57.91 | 47.28 | 55.32 |
Total potential splices (M) | 5.27 | 5.32 | 5.27 | 5.32 | 5.28 | 5.27 |
% Reads mapped to junction | 15.13 | 12.26 | 15.33 | 11.54 | 14.16 | 12.16 |
Unique mapping (M) | 34.41 | 43.00 | 34.29 | 45.46 | 36.82 | 43.02 |
% Unique mapping | 75.54 | 76.17 | 75.25 | 78.50 | 77.87 | 77.75 |
% Uniquely mapped reads | 98.73 | 99.07 | 99.74 | 98.70 | 98.83 | 99.24 |