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Table 3 Hypothetical cultivar-specific genes based upon the reciprocal blast

From: Transcriptome analysis of two buffalograss cultivars

Transcript

Transcript

Average read

Description

 

length (bp)

numbers

 

Prestige

preC_247169

647

206.0

dna repair and recombination protein

preC_214648

316

61.5

maize proteinase inhibitor

preC_236041

545

54.0

copper transporter 1

preC_262069

551

33.3

proteasome assembly chaperone 2

preC_256520

237

28.2

e-cadherin binding protein

preC_167144

650

23.7

cle family 306 protein

preC_256357

190

21.2

zinc finger family expressed

preC_128843

234

15.2

pentatricopeptide repeat-containing protein

preC_231580

353

14.8

s-receptor kinase

preC_169805

381

13.5

protein epidermal patterning factor 2-like

378

378C_71451

258

278.7

snare-like protein

378C_151851

237

108.5

tubulin-specific chaperone d-like

378C_238144

303

84.2

subtilisin-like protease

378C_152448

174

70.7

lin1 protein

378C_199252

175

51.8

craniofacial development protein 1-like

378C_223520

325

47.0

pollen-specific protein like

378C_24916

192

18.5

trab domain-containing

378C_235655

173

16.8

nicotinate-nucleotide pyrophosphorylase

378C_202598

275

15.3

growth-regulating factor 2

378C_135613

214

10.2

serine threonine-protein kinase ctr1-like

  1. Listed are the top 10 most highly expressed from each cultivar with the removal of sequences of vague descriptions. Average expression is a measure of reads mapped per sample.