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Table 2 Contigs of importance, shorter than 75 bp, taking into account in our analysis

From: Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing

Contig length

Similarity search results

E.C. number

k-mer coverage

Normalized coverage

70 bp

NADH dehydrogenase subunit f

1.6.5.3

1.54

2.450

62 bp

Fructose-1,6-bisphosphatase

3.1.3.11

1.62

2.790

72 bp

Pectin methylesterase 1

N.A.a

1.58

2.473

69 bp

Penicillin amidase

3.5.1.11

1.71

2.744

64 bp

Polyphosphate kinase

2.7.4.1

1.26

2.122

59 bp

Xanthine dehydrogenase

1.17.1.4

1.35

2.414

50 bp

Gamma-glutamyl phosphate reductase

N.A.

1.78

3.708

55 bp

Methylenetetrahydrofolate reductase

N.A.

1.72

3.262

73 bp

Pyrophosphate-dependent phosphofructokinase

2.7.1.11

1.56

2.423

52 bp

Urease

3.5.1.5

1.09

2.180

68 bp

Glucokinase

2.7.1.2

1.47

2.380

58 bp

Malate dehydrogenase

1.1.1.37

1.96

3.553

59 bp

Phosphoribosylformylglycinamidine cyclo-ligase

6.3.3.1

1.52

2.718

54 bp

Phosphoribosylaminoimidazole carboxylase

4.1.1.21

2.14

4.127

56 bp

Pyruvate dehydrogenase (acetyl-transferring)

1.2.4.1

1.57

2.931

51 bp

2,3-bisphosphoglycerate-independent phosphoglycerate mutase

5.4.2.1

1.11

2.264

65 bp

NAD-specific glutamate dehydrogenase

1.4.1.2

1.81

3.017

  1. aNot applicable since no E.C. number has been allocated to these proteins.