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Table 1 Molecularly identified GBT-B1 gene trap lines

From: Efficient disruption of Zebrafish genes using a Gal4-containing gene trap

 

Linked trap integration

Zv9 integration

IMG

IMG-linker-^Gal4-VP16

tpl3

 

19:30.5 Mb

nudC

YRWTQSLSEVDFSRNSPGYQK

tpl4

CTGg tcagtctttgaagaggatcaggcgttcagacagacggggggcagaatctgttacagaag

3:16936744

stat5.1

GTLSAHFRNMDFSRNSPGYQK

tpl5

CTGtttctcgccatcaccatgtgcaccagtctgttgttcgtgtataacgtcagctacaataat

2:9043594

st6GalNAc5

QGYSSIIEHKDFSRNSPGYQK

tpl6

CTGcttactagtactggaatggacccgcttatgccttcagaactgccttaatccttcgtgaca

3:34884583

nsfa

MATRDFSRNSPGYQK

tpl7

CTGagtgactataaatgcctgaaaaatcaactcatgtaagcacaaaatccttttgaacttttg

21:24267477

jam3b

not in frame

tpl8

CTGcagctggatcagtttgtgttgtggaatgttgaggcaggctttctttctaggattaaatgc

17:37963171

zfp36l1a

FDFSEMINNKDFSRNSPGYQK

tpl9

 

12:30.4 Mb

nfe2l1

QDIMSIMELQDFSRNSPGYQK

tpl10

CTGgggtgtctgctgattcaccaagctccaaaatattgaattcctttcgtcattaaatggcct

19:7006530

atp1a3a

MEDFSRNSPGYQK

tpl11

CTGtgaggctgtgtgaattttagcctcagtttcctgttctttgctgacagaagtggcacctgg

14:49326467

bbs7

CFGMKKGEAVDFSRNSPGYQK

tpl12

CTGtttaattggtgttttttatttaatagattataacagttcgggtctgacattctcatgctg

6:30448559

sgip1

GNIALSPSPLDFSRNSPGYQK

tpl13

CTGggcacatttaatgtgtctgagtcaatgccgagtgaggcaagtcaaggtcagcgaagtgat

1:45249862

dkey-9i23.6

MEEQTAKDFSRNSPGYQK

tpl14

CTGaaaattcaacaagatatgtttgattctcaatttgaagtctctgacttttgattgcagtct

16:42014825

osbpl10

SSSSVSWAVCDFSRNSPGYQK

tpl15

 

19:45.3 Mb

eef1a1l1

PMEAANFTSQDFSRNSPGYQK

tpl16

CTGgatagaacagggtttttccccccccccacaaaccataatcgcagacaattccaacccaaa

12:44187402

ebf3

GNPRDMRRFQDFSRNSPGYQK

tpl17

CTGttagtgtatatacagtgctcggcataactggctacaacccattttgaaaatgaatatttt

16:6676846

plecb1

LLEVLSGETLDFSRNSPGYQK

tpl18

CTGggcatatcgtacaggtaaagttacaggacccatatataaaatgaaaatcagttttaaaaa

19:14006402

fam46bb

Into exon 1

tpl19

CTGacaagctaacaggctaaccttaatttagttaacgtttcatcttctctcatctgctgtttg

3:28982811

fleer

GEYTATVYKMDFSRNSPGYQK

tpl20

CTGtggtcaacccctcaaacaaccgccaaccccactcaccccctaggaggagaataaaaacta

3:15727276

lasp1

PTEKVNCLDKDFSRNSPGYQK

tpl21

CTGcctgagagcaagtcaagcagtctccatattgatgaggcagagaagagctgtttgactctc

19:34858311

triqk

EAKRSAPGIRDFSRNSPGYQK

tpl22

CTGacatgaccagcaatttactgcagctgccattggttgtgaaaagaattagtggcatgtgcg

12:18869291

baiap2l1a

SSKYEIKENEDFSRNSPGYQK

tpl23

CTGagggattcatatttgttacatttgtaaaggcgattagttgtctttaaaaagtgagtaaaa

21:6304212

fnbp1

TLWPFIKKNKDFSRNSPGYQK

tpl24

CTGgctgtagagatattaataaatatgttcaacttacttttcttttcctcttgtgcagatctc

17:19362393

cyp26c1

VGETFHWLFQDFSRNSPGYQK

tpl25

CTGagtaattaaactttgtccattgatttaataaaaaagctaattttaatactaagcaggggt

6:21614143

srp68

VDAKTKLEAQDFSRNSPGYQK

tpl26

CTGcacatacaataatatgctatttagatttgatacgtttttgttaaatagtaatattgttaa

20:4058970

fam89A

AALALLRKEMDFSRNSPGYQK

tpl27

CTGctggggcgatagatagactttccagttagcactatctaatgcgatcccgtgaacagcatt

17:12186310

snap25b

TRRMLQLVEEDFSRNSPGYQK

  1. First column, gene trap line. Second column, genomic sequence adjacent to 3’ end of the gene trap integration. The capital CTG are the last three nucleotides of Tol2. Third column, location of the gene trap integration on Zv9 zebrafish genome assembly. Fourth column, insertionally mutated gene. Fifth column, sequence of the IMG-Gal4-VP16 fusion protein, IMG sequence is highlighted in aqua, Gal4 sequence is highlighted in magenta. The “linker” sequence is encoded by the linker between splice acceptor and Gal4 in GBT-B1.