From: Alignment-free supervised classification of metagenomes by recursive SVM
#kind of seeds | Density of seed | Length=4 | Length=5 | Length=6 | Length=7 | ||||
---|---|---|---|---|---|---|---|---|---|
Best result | Accuracy | Best result | Accuracy | Best result | Accuracy | Best result | Accuracy | ||
0/3 | 0.003 | 5-tuple | 0.78 | 5-tuple | 0.88 | 6-tuple | 0.82 | 7-tuple | 1.00 |
20 features | 5f eatures | 5 features | 5 features | ||||||
0.005 | 5-tuple | 0.76 | 5-tuple | 0.90 | 6-tuple | 1.00 | 6-tuple | 1.00 | |
50 features | 10 features | 5 features | 5 features | ||||||
0.01 | 5-tuple | 0.90 | 5-tuple | 1.00 | 5-tuple | 1.00 | 5-tuple | 1.00 | |
20 features | 5 features | 5 features | 5 features | ||||||
0/5 | 0.003 | 4-tuple | 0.86 | 5-tuple | 0.78 | 6-tuple | 1.00 | 7-tuple | 1.00 |
200 features | 50 features | 10 features | 5 features | ||||||
0.005 | 4-tuple | 0.94 | 5-tuple | 0.94 | 6-tuple | 1.00 | 5-tuple | 1.00 | |
100 features | 10 features | 5 features | 5 features | ||||||
0.01 | 4-tuple | 1.00 | 5-tuple | 1.00 | 5-tuple | 1.00 | 5-tuple | 1.00 | |
5 features | 5 features | 5 features | 5 features | ||||||
0/10 | 0.003 | 8-tuple | 0.60 | 5-tuple | 0.96 | 6-tuple | 1.00 | 6-tuple | 1.00 |
50 features | 30 features | 5 features | 5 features | ||||||
0.005 | 4-tuple | 0.96 | 5-tuple | 1.00 | 6-tuple | 1.00 | 6-tuple | 1.00 | |
100 features | 10 features | 5 features | 5 features | ||||||
0.01 | 4-tuple | 1.00 | 4-tuple | 1.00 | 4-tuple | 1.00 | 5-tuple | 1.00 | |
20 features | 5 features | 5 features | 5 features |