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Table 1 Comparison of RefSeq orthology vs. HomoloGene

From: Comparison of RefSeq protein-coding regions in human and vertebrate genomes

Organism

RefSeq orthologs

Avg. synteny support1

HG orthologs

Orthologs that agree with HG

Orthologs in conflict with HG

Percent that agree with HG

RefSeq orthologs not in HG

In HG, not in RefSeq orthologs

Chimpanzee

17070

4.7

16037

15042

14

99.9%

1937

995

Mouse

16174

5.0

16514

15605

60

99.6%

407

909

Rhesus macaque

15981

4.4

15144

13668

39

99.7%

2146

1476

Cow

15910

4.7

15813

14781

38

99.7%

974

1032

Dog

15890

4.7

15904

15016

40

99.7%

721

888

Rat

15231

4.4

15200

13480

51

99.6%

1566

1720

Chicken

11201

4.1

12141

10618

30

99.7%

497

1523

Zebrafish

5799

2.1

10786

4851

11

99.8%

667

5935

  1. Comparisons are made to HomoloGene (HG) clusters containing a single gene from human and the indicated species, using data from HG Release 67 (Dec 13, 2012).
  2. 1out of 6 flanking loci assayed for each orthologous gene.