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Table 1 G. holbrooki cDNA library sequencing and assembly results

From: Custom microarray construction and analysis for determining potential biomarkers of subchronic androgen exposure in the Eastern Mosquitofish (Gambusia holbrooki)

Roche 454 sequencing

 

Illumina sequencing

 

Total number of clean bases

1,338,668,195

Total number of bases

67,321,337

Number of fully assembled reads

8,283,907

Number of clean reads

13,930,835

Number of contigs

162,704

Number of contigs

568,658

Average contig size

256.95

Average contig size

133.25

Range of contig length

100 – 3,413

Range of contig length

50 – 2,976

454 and Illumina co-assembly results

  

Number of starting input sequences

285,780

Number of sequences kept after clean-up

213,296

Number of final assemblies

165,062

Number of gene hits with e-value ≤ 10-4

31,160

Number of sequences with matches to Homo sapiens

27,505

Number of sequences with matches to Danio rerio

31,420