Table 2 DNA methylation at CpG sites in AHB and EHB
From: Intronic Non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees
AHB CpG methylation by genetic region | |||
|---|---|---|---|
Type (alphabetical order) | Analyzed | Methylated | Methylated % |
Cds | 1,273,706 | 40,288 | 3.16% |
Downstream | 2,086,041 | 37,798 | 1.81% |
Exon | 1,273,706 | 40,288 | 3.16% |
Gene | 7,105,672 | 62,011 | 0.87% |
Intergenic | 9,767,537 | 35,409 | 0.36% |
Intron | 5,887,038 | 22,463 | 0.38% |
SpliceSiteAcceptor | 14 | 1 | 7.14% |
SpliceSiteDonor | 2,257 | 81 | 3.59% |
Transcript | 7,806,591 | 64,990 | 0.83% |
Upstream | 2,294,855 | 38,169 | 1.66% |
EHB CpG methylation by genetic region | |||
Type (alphabetical order) | Analyzed | Methylated | Methylated % |
Cds | 1,318,533 | 82,558 | 6.26% |
Downstream | 2,255,737 | 89,512 | 3.97% |
Exon | 1,318,533 | 82,558 | 6.26% |
Gene | 7,555,968 | 149,371 | 1.98% |
Intergenic | 10,471,326 | 111,682 | 1.07% |
Intron | 6,293,493 | 68,460 | 1.09% |
SpliceSiteAcceptor | 18 | 1 | 5.56% |
SpliceSiteDonor | 2,504 | 215 | 8.59% |
Transcript | 8,297,751 | 158,204 | 1.91% |
Upstream | 2,468,142 | 87,960 | 3.56% |