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Table 5 Selected genes with different expression trends in five fruit developmental stages

From: Transcriptome profiling of fruit development and maturation in Chinese white pear (Pyrus bretschneideri Rehd)

Gene ID

Gene annotation

TPM (transcript per million clean tag)

FS1

FS2

FS3

FS4

FS5

 

Up-regulated pattern

     

Unigene86203_PB_AHAU

Sucrose phosphate synthase

0.35

0.54

1.39

1.84

0.84

Unigene51453_PB_AHAU

Starch synthase

6.75

11.07

21.31

9.69

30.83

Unigene28216_PB_AHAU

Alkaline invertase

66.27

107.1

149.35

209.27

190.33

Unigene31510_PB_AHAU

Phosphofructokinase

1.21

0.89

15.25

21.55

25.8

Unigene79028_PB_AHAU

Maltose transporter

30.11

34.45

35.17

72.65

123.31

Unigene7706_PB_AHAU

Aldehyde dehydrogenase

48.28

59.44

87.67

93.03

102.54

Unigene11393_PB_AHAU

Expansin

21.63

20.35

39.33

74.99

148.11

Unigene84426_PB_AHAU

ACC oxidase

8.82

13.57

13.69

6.68

159

Unigene41650_PB_AHAU

4-Hydroxyphenylpyruvate dioxygenase

0

0.54

3.47

4.01

5.36

Unigene49425_PB_AHAU

Leucoanthocyanidin dioxygenase

1.73

11.07

13.34

49.77

36.19

 

Down-regulated pattern

     

Unigene78545_PB_AHAU

Auxin influx transport protein

130.12

120.31

136.7

65.97

32.84

Unigene28595_PB_AHAU

Sucrose synthase

1120.57

775.21

201.84

18.2

5.7

Unigene2239_PB_AHAU

Pyrophosphate-dependent phosphofructo-1-kinase

28.38

16.42

2.08

3.01

1.01

Unigene82187_PB_AHAU

Alcohol acyl-transferase

179.78

215.27

80.22

12.86

19.43

Unigene21328_PB_AHAU

Alcohol acyl-transferase

185.49

154.04

102.91

14.53

9.55

Unigene41185_PB_AHAU

Alcohol acyl-transferase

958.95

738.98

286.74

201.42

84.78

Unigene24664_PB_AHAU

Flavonoid 3-hydroxylase

114.55

62.47

0

3.67

0.34

Unigene89425_PB_AHAU

COL domain class transcription factor

100.88

80.86

13.34

10.52

4.36

Unigene40707_PB_AHAU

Arogenate/prephenate dehydratase

309.04

207.23

45.74

17.04

9.21

Unigene42300_PB_AHAU

UDPG flavonoid 7-O-glucosyltransferase

125.62

192.42

72.25

34.07

67.52

 

Low-high-low pattern

     

Unigene28017_PB_AHAU

NAD-dependent sorbitol dehydrogenase

9.52

6.96

21.66

11.69

4.02

Unigene48458_PB_AHAU

NAD-dependent sorbitol dehydrogenase

65.58

60.15

208.43

94.87

28.15

Unigene40996_PB_AHAU

p-Hydroxyphenylpyruvate dioxygenase

0.52

1.25

12.13

6.68

8.88

Unigene36705_PB_AHAU

Cytochrome P450

36.68

39.98

208.77

167.35

69.7

Unigene1335_PB_AHAU

Cytochrome P450

12.46

8.21

77.96

21.38

11.9

Unigene15706_PB_AHAU

Salt-tolerance protein

14.36

16.78

83.86

18.2

13.57

Unigene6651_PB_AHAU

DELLA protein

44.99

40.7

80.74

32.4

51.44

Unigene29424_PB_AHAU

Polyphenol oxidase

33.57

28.02

79.52

40.92

14.07

Unigene2416_PB_AHAU

Gibberellin oxidase

0.35

1.61

77.96

17.7

0

 

Constitutive pattern

     

Unigene1535_PB_AHAU

S6 ribosomal protein

650.26

506.57

717.1

432.91

403.28

Unigene42402_PB_AHAU

Structural molecule activity

505.09

381.09

387.23

437.58

380.99

Unigene41042_PB_AHAU

DEAD-box RNA helicase-like protein

481.38

399.83

458.09

641.68

533.46

Unigene41056_PB_AHAU

Large ribosomal subunit

333.09

256.14

291.59

243.18

225.51

Unigene40598_PB_AHAU

Plasma membrane ATPase

29.93

22.13

20.62

50.1

13.57

Unigene41711_PB_AHAU

Plasma membrane intrinsic protein

19.38

28.92

41.23

23.88

21.11

Unigene8634_PB_AHAU

Plasma intrinsic protein

1121.95

866.6

964.51

974.21

799.18

Unigene13819_PB_AHAU

BHLH domain class transcription factor

212.49

243.11

169.79

168.85

206.92

Unigene3327_PB_AHAU

60S ribosomal protein L35a

180.65

182.6

166.5

154.99

138.73

Unigene40848_PB_AHAU

Ribosomal protein S21e

173.03

218.12

188.33

170.36

182.62

  1. Notes: Gene ID is the accession number of each assembled unigenes deposited in the Transcriptome Shotgun Assembly Sequence Database (TSA) at NCBI.
  2. Abbreviations: DGE, digital gene expression; FS1, fruit stage 1; FS2, fruit stage 2; FS3, fruit stage 3; FS4, fruit stage 4; FS5, fruit stage 5.