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Table 3 Results of pleiotropic QTL scan and testing of models fitting one or two QTLs per chromosome

From: Genome-wide analysis of porcine backfat and intramuscular fat fatty acid composition using high-density genotyping and expression data

SSC

Trait

Position (CI)

LR

P-value

a(SE)

Most likely model: one pleiotropic QTL

  

8

C16:0BF

87 (87–88)

52.34

4.3 × 10-12

0.94 (0.13)

 

C16:0IMF

0.65 (0.15)

 

C16:1(n-7)BF

90 (86–91)

32.99

6.8 × 10-8

0.18 (0.03)

 

C16:1(n-7)IMF

0.23 (0.05)

11

C20:3BF

7 (7–8)

15.91

3.5 × 10-4

0.02 (0.01)

 

C20:3IMF

0.07 (0.02)

17

C16:0BF

58 (58–59)

15.54

4.2 × 10-4

0.45 (0.16)

 

C16:0IMF

0.57 (0.16)

Most likely model: two QTLs on the same chromosome

 

4

C16:0BF

61 (61–64)

19.70

1.9 × 10-4

0.49 (0.13)

 

C16:0IMF

104 (101–104)

0.43 (0.13)

 

C18:2BF

61 (61–62)

37.99

5.6 × 10-9

−1.18 (0.21)

 

C18:2IMF

35 (34–45)

−1.46 (0.33)

 

C20:3BF

75 (75–77)

35.64

8.9 × 10-8

−0.05 (0.01)

 

C20:3IMF

43 (42–46)

−0.08 (0.02)

12

C16:0BF

68 (66–70)

24.43

2.0 × 10-5

0.63 (0.13)

 

C16:0IMF

34 (33–38)

  

0.65 (0.14)

  1. All the QTL reached the FDR < 0.05; Position: cM, CI: Confidence intervals; LR: Likelihood ratio test values; a (SE): additive effect (standard error).