Table 3 A summary of selected Foc-responsive genes

Pathogenesis-related and other known defense-related genes

7G16510*

8.2

5.2

12.7

29.6

16.5

20.9

Pathogenesis-related protein, thaumatin-like protein

6G31470

4.3

2.6

70.1

>100

41.0

46.6

Thaumatin-like protein

1G02580

0.6

0.2

10.2

4.7

10.2

15.0

Thaumatin-like protein

6G21330

1.1

0.7

5.4

11.4

10.7

25.1

Endochitinase

CUFF.40341.1*

6.3

2.1

2.3

3.9

6.8

65.9

Acidic endochitinase

CUFF.18858.1

4.8

0.1

0.2

0.7

0.2

0.3

Non-specific lipid-transfer protein 2-like

5G10940

0.6

0.3

0.1

0.0

0.0

0.1

Trypsin inhibitor

11G16380

1.6

0.9

>100

>100

45.5

40.6

Phenylalanine ammonia-lyase 3 (PAL3)

9G30640

3.6

1.4

89.8

>100

9.2

18.7

Germin family protein 12

randomG28090

0.9

0.3

8.8

10.5

4.5

23.8

Germin family protein 3

10G01250

7.5

4.5

27.8

>100

37.0

40.9

Lichenase (endo-(1-- > 4)-beta-glucanase)

9G23850

0.79

0.92

>100

>100

>100

>100

Lignin-forming anionic peroxidase

CUFF.1900

0.8

0.3

8.4

13.4

10.0

12.6

bon1-associated protein 2 (BAP2)-like

5G08810

1.0

0.2

0.1

0.2

0.1

0.4

Allene oxide synthase 2 (CYP74A2)

Ethylene biosynthesis and signaling

randomG26960*

2.7

1.4

65.0

38.4

>100

>100

1-aminocyclopropane-1-carboxylate oxidase

randomG20430*

2

0.4

>100

>100

>100

>100

1-aminocyclopropane-1-carboxylate oxidase

5G09690

1.7

1.2

3.7

30.7

7.6

2.8

1-aminocyclopropane-1-carboxylate oxidase

2G07300

0.5

0.7

1.6

9.5

19.1

3.8

Putative Ethylene-responsive transcription factor 1 (ERF1)

4G05520

0.5

0.6

19.6

50.9

>100

>100

ERF1B

randomG27100

0.5

0.4

16.3

66.3

>100

83.0

ERF071

randomG16100

1.3

1.2

10.3

21.4

24.2

9.9

ERF9

11G20930

0.7

0.7

7.0

10.5

7.8

7.2

ERF2

Transcription factors

2G20130

0.5

1.6

22.4

13.5

8.3

9.5

Putative WRKY transcription factor 6 (WRKY6)

4G01930*

0.0

0.1

0.7

0.8

0.1

0.1

WRKY40

randomG14780

2.0

10.4

>100

>100

35.3

37.2

Putative Transcription factor ICE1

5G14600

0.9

1.7

11.2

12.8

96.2

12.7

Putative Myb-related protein Myb4

5G01960

0.98

3.71

>100

>100

>100

>100

Homeotic protein knotted-1

CUFF.15326.1*

0.4

0.6

>100

>100

6.6

11.9

Sigma factor binding protein (SIB)1

Kinases

9G19130

0.4

0.4

0.0

0.4

0.1

0.0

Mitogen-activated protein kinase kinase kinase ANP1

6G07600

0.6

1.7

62.1

65.7

94.5

67.7

STE_MEKK (mkkA)

10G21160

0.66

5.02

>100

>100

>100

>100

Mitogen-activated protein kinase kinase 2

10G07820

1.5

0.6

>100

>100

14.7

22.0

BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase (BAK)1-like

2G02850

2.3

1.1

1.1

0.9

7.6

1.3

Putative Wall-associated receptor kinase (WAK 1)

6G15260

0.8

0.8

2.2

3.0

5.3

3.8

WAK2

4G09850

1.0

9.4

>100

40.9

5.4

5.7

WAK4