From: Evaluation of approaches for estimating the accuracy of genomic prediction in plant breeding
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Scenario | †Statistic | M0 | *M1(15) | M2(16) | M3(17) | M4(21) | M5(24) | M6(25) | M7(35) |
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1 | N | 1000 | 1000 | 1000 | 1000 | 1000 | 1000 | 1000 | 1000 |
MIN | 0.750 | 0.327 | 0.265 | 0.265 | 0.384 | 0.707 | 0.316 | 0.750 | |
MEAN | 0.843c | 0.877a | 0.727 e | 0.727e | 0.858b | 0.819d | 0.663f | 0.840c | |
MAX | 0.908 | 1.000 | 1.000 | 1.000 | 1.000 | 0.893 | 0.884 | 0.899 | |
STD | 0.024 | 0.109 | 0.104 | 0.104 | 0.093 | 0.028 | 0.084 | 0.023 | |
MSD | 0.000 | 0.013 | 0.025 | 0.025 | 0.009 | 0.002 | 0.040 | 0.001 | |
Q1 | 0.829 | 0.807 | 0.661 | 0.661 | 0.802 | 0.803 | 0.612 | 0.826 | |
Median | 0.846 | 0.890 | 0.723 | 0.724 | 0.862 | 0.822 | 0.665 | 0.841 | |
Q3 | 0.860 | 0.983 | 0.793 | 0.793 | 0.923 | 0.839 | 0.716 | 0.856 | |
2 | N | 839 | 839 | 839 | 839 | 839 | 839 | 839 | 839 |
MIN | 0.31 | 0.00 | 0.00 | 0.00 | 0.00 | 0.06 | 0.00 | 0.08 | |
MEAN | 0.65a | 0.63c | 0.50e | 0.50e | 0.64ab | 0.58d | 0.46f | 0.64bc | |
MAX | 0.85 | 1.00 | 1.00 | 1.00 | 1.00 | 0.79 | 1.00 | 0.82 | |
STD | 0.09 | 0.29 | 0.26 | 0.26 | 0.26 | 0.10 | 0.20 | 0.09 | |
MSD | 0.000 | 0.083 | 0.092 | 0.092 | 0.069 | 0.02 | 0.081 | 0.011 | |
Q1 | 0.61 | 0.42 | 0.31 | 0.31 | 0.47 | 0.53 | 0.33 | 0.59 | |
Median | 0.66 | 0.64 | 0.48 | 0.48 | 0.68 | 0.59 | 0.47 | 0.65 | |
Q3 | 0.71 | 0.91 | 0.67 | 0.67 | 0.85 | 0.64 | 0.59 | 0.70 | |
3 | N | 1000 | 1000 | 1000 | 1000 | 1000 | 1000 | 1000 | 1000 |
MIN | 0.81 | 0.60 | 0.61 | 0.61 | 0.69 | 0.80 | 0.54 | 0.78 | |
MEAN | 0.85a | 0.72c | 0.73c | 0.73c | 0.81b | 0.85a | 0.64d | 0.81b | |
MAX | 0.89 | 0.88 | 0.90 | 0.89 | 0.96 | 0.88 | 0.78 | 0.84 | |
STD | 0.01 | 0.04 | 0.04 | 0.04 | 0.04 | 0.01 | 0.04 | 0.01 | |
MSD | 0.0000 | 0.0193 | 0.0169 | 0.0176 | 0.0036 | 0.0002 | 0.0477 | 0.0017 | |
Q1 | 0.85 | 0.69 | 0.70 | 0.70 | 0.79 | 0.84 | 0.61 | 0.81 | |
Median | 0.85 | 0.72 | 0.73 | 0.73 | 0.81 | 0.85 | 0.64 | 0.81 | |
Q3 | 0.86 | 0.75 | 0.76 | 0.76 | 0.84 | 0.85 | 0.66 | 0.82 | |
4 | N | 955 | 955 | 955 | 955 | 955 | 955 | 955 | 955 |
MIN | 0.60 | 0.14 | 0.14 | 0.14 | 0.15 | 0.48 | 0.24 | 0.52 | |
MEAN | 0.72a | 0.32e | 0.33e | 0.33e | 0.36d | 0.62c | 0.63b | 0.64b | |
MAX | 0.79 | 0.52 | 0.53 | 0.52 | 0.56 | 0.72 | 0.93 | 0.72 | |
STD | 0.03 | 0.06 | 0.06 | 0.06 | 0.07 | 0.04 | 0.09 | 0.03 | |
MSD | 0.000 | 0.160 | 0.157 | 0.158 | 0.130 | 0.012 | 0.015 | 0.007 | |
Q1 | 0.70 | 0.29 | 0.29 | 0.29 | 0.32 | 0.60 | 0.57 | 0.62 | |
Median | 0.72 | 0.32 | 0.33 | 0.33 | 0.37 | 0.62 | 0.64 | 0.64 | |
Q3 | 0.74 | 0.36 | 0.37 | 0.37 | 0.41 | 0.65 | 0.70 | 0.66 |