Skip to main content

Table 5 Psorophora albipes polymorphisms detected on a set of 1,100 coding sequences of 16 functional classes

From: A deep insight into the sialotranscriptome of the mosquito, Psorophora albipes

Class

Average (Syn /Codon) x 1001

SE

Average (NS /codon) x 1002

SE

NS/Syn

Average coverage3

SE

N

Nuclear regulation

1.4343

0.5854

0.0217

0.0207

0.0152

278.6

48.3

11

Protein synthesis

0.4095

0.1637

0.0885

0.0389

0.2161

2981.7

243.9

96

Protein export

1.2332

0.1954

0.1188

0.0491

0.0963

340.0

34.0

65

Cytoskeletal

0.9455

0.1606

0.1271

0.0722

0.1344

322.5

48.0

54

Proteasome

2.6511

0.4884

0.1487

0.0550

0.0561

189.0

20.4

35

Transcription

1.1524

0.2376

0.1531

0.0785

0.1329

410.2

99.3

47

Signal transduction

1.0220

0.1283

0.1604

0.0385

0.1570

365.9

69.9

143

Transporters

1.6399

0.3186

0.1997

0.0638

0.1218

400.2

61.0

89

Detoxification

1.5145

0.3318

0.2194

0.0739

0.1448

198.5

31.2

16

Transcription factor

0.9573

0.3958

0.2243

0.1351

0.2343

237.2

30.2

12

Immunity

2.4690

0.9928

0.2398

0.1077

0.0971

224.7

47.6

11

Protein modification

1.1421

0.2421

0.2514

0.0877

0.2201

370.1

86.2

56

Metabolism

1.5898

0.1807

0.2515

0.0447

0.1582

389.2

72.1

147

Extracellular matrix

1.7871

0.3776

0.3044

0.0994

0.1703

280.6

39.9

29

Unknown conserved

1.6564

0.1961

0.3244

0.0626

0.1958

372.9

44.6

127

Secreted

0.5885

0.0849

0.3308

0.0498

0.5621

2729.7

288.8

334

Total

       

1100

  1. 1Number of synonymous polymorphism per 100 codons.
  2. 2Number of non-synonymous polymorphism per 100 codons.
  3. 3Average read coverage of coding sequences.