Rapid microsatellite development for tree peony and its implications

BMC Genomics

Table 4 Microsatellite distribution in different genomic regions of tree peony using the Arabidopsis genome as a reference

Microsatellite distribution				Repeat motif
Mapping type	c	c*	p1	p2	p3	p4	p5	p6
Intergenic	8173	727	203	18797	410	754	2	10
No-mapped	10464	218	3560	25867	5039	766	24	80
3′ UTR	915	180	0	1534	14	0	0	0
CDS	1755	397	15	4674	7440	0	0	9
Intron	12760	1051	1	28034	130	135	0	0
5′ UTR	921	284	0	10409	59	0	0	1
Multi-mapped	3963	1024	0	12700	544	0	0	0

Compound SSRs are designated as follows: c* = no interruption between two motifs; c = interruption between two motifs; p1–p6 refers to the repeat motif (e.g., mono-nucleotide, di- nucleotide, etc.).

ISSN: 1471-2164