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Table 1 Enriched Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways generated by Database for Annotation, Visualization and Integrated Discovery (DAVID) ( p ≤ 0.05)

From: The early phase transcriptome of bovine monocyte-derived macrophages infected with Staphylococcus aureus in vitro

 

KEGG pathway

p-value

A

NOD-like receptor signaling pathway*

4.9 × 10-7

 

Cytokine-cytokine receptor interaction*

1.7 × 10-6

 

Toll-like receptor signaling pathway*

6.2 × 10-5

 

Asthma*

9.8 × 10-4

 

T cell receptor signaling pathway

3.6 × 10-3

 

Jak-STAT signaling pathway

4.1 × 10-3

 

Apoptosis

4.4 × 10-3

 

Chemokine signaling pathway

4.9 × 10-3

 

Cytosolic DNA-sensing pathway

1.4 × 10-2

 

Allograft rejection

2.6 × 10-2

 

RIG-I-like receptor signaling pathway

3.0 × 10-2

 

Sphingolipid metabolism

3.0 × 10-2

 

Natural killer cell mediated cytotoxicity

4.8 × 10-2

 

Fc epsilon RI signaling pathway

4.8 × 10-2

B

Cytokine-cytokine receptor interaction*

5.2 × 10-4

 

Jak-STAT signaling pathway

2.8 × 10-3

 

Colorectal cancer

1.4 × 10-2

 

Toll-like receptor signaling pathway

1.8 × 10-2

 

Pathways in cancer

2.6 × 10-2

  1. A) The list of differentially regulated on microarray (n = 418) and Ensembl reannotated genes was used as an input for functional annotation clustering; B) Subset of these genes (n = 28; List eQG from [18]) was used as an input. Asterisk (*) denotes the significant KEGG pathways after the Benjamini–Hochberg multiple testing correction (p ≤ 0.05).
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BMC Genomics

ISSN: 1471-2164

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