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Table 5 Top upstream regulators identified by Ingenuity Pathway Analysis (IPA)

From: The early phase transcriptome of bovine monocyte-derived macrophages infected with Staphylococcus aureus in vitro

 

Top upstream regulators

p-value

A

CD40 ligand (CD154)

2.25 × 10-24

 

TNF receptor superfamily member 5 (CD40)

1.05 × 10-22

 

Interleukin 10 (IL-10)

1.01 × 10-21

 

5′-inosinic acid (poly rI:rC)

1.73 × 10-20

 

Lipopolysaccharide (LPS)

6.21 × 10-20

B

Peptidoglycan

1.79 × 10-13

 

Suppressor of cytokine signaling 1 (SOCS1)

7.66 × 10-13

 

Tyrphostin AG490 (AG490)

1.71 × 10-12

 

Interleukin 10 (IL-10)

3.52 × 10-12

 

Toll-like receptor 2 (TLR2)

3.55 × 10-12

  1. A) The list of differentially regulated on microarray (n = 418) and Ensembl reannotated genes was used as an input for IPA; B) Subset of these genes (n = 28; List eQG from [18]) was used as an input.