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Table 3 Genome-wide significant SNPs for final conformation score and dairy character traits

From: Genome wide association studies for body conformation traits in the Chinese Holstein cattle population

Trait

SNP name

Chr.

Position (bp)

Nearest gene

Distance (bp)

Heritability

Threshold

Conformation (final score)

ARS-BFGL-NGS-109711

5

110149999

ANKRD54

within

0.00980

0.00942

Dairy character

ARS-BFGL-NGS-14022

3

35255950

SLC25A24

45,501

0.01490

0.00929

BTB-01238380

12

53100776

SCEL

within

0.00936

0.00929

ARS-BFGL-NGS-55380

16

21821449

SPATA17

14,623

0.00990

0.00929

Angularity

ARS-BFGL-NGS-14022

3

35255950

SLC25A24

45,501

0.01100

0.00969

 

ARS-BFGL-NGS-113826

12

17150394

HTR2A

261,113

0.01320

0.00969

  1. Note: Heritability and threshold were obtained using the LASSO method. Nearest gene are symbols of gene full name in the NCBI database (http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/).