Genome wide association studies for body conformation traits in the Chinese Holstein cattle population

BMC Genomics

Table 4 Genome-wide significant SNPs for capacity and the component traits

Trait	SNP name	Chr.	Position (bp)	Nearest gene	Distance (bp)	Heritability	Threshold
Capacity	Hapmap40339-BTA-117016	3	10640386	DARC	7,094	0.01100	0.00894
	ARS-BFGL-NGS-114456	7	30964539	LOC789456	97,615	0.01100	0.00894
	ARS-BFGL-NGS-44162	9	39626344	LOC539486	within	0.01160	0.00894
	ARS-BFGL-NGS-26589	18	4852600	NUDT7	137,863	0.01080	0.00894
	ARS-BFGL-NGS-115067	25	37927752	TMEM130	8,967	0.01280	0.00894
Stature	Hapmap60794-rs29022851	6	115008971	CPEB2	within	0.01110	0.00953
Stature	BTA-72885-no-rs	29	19560064	LOC782090	81,135	0.01370	0.00953
Body depth	Hapmap40339-BTA-117016	3	10640386	DARC	7,094	0.00884	0.00872
Loin strength	ARS-BFGL-NGS-70552	15	35177124	SERGEF	within	0.01340	0.00895
Loin strength	BTB-00938945	26	32943986	GPAM	19,414	0.00908	0.00895
Height at front end	BTB-01238380	12	53100776	SCEL	within	0.00875	0.00811
Animal size	ARS-BFGL-NGS-115067	25	37927752	TMEM130	8,967	0.01130	0.00953
Chest width	BTA-110160-no-rs	8	81389800	GAS1	121,119	0.01870	0.00969
	ARS-BFGL-NGS-115466	18	10002426	CDH13	within	0.01410	0.00969
	BTA-45515-no-rs	19	43170256	PTRF	8,091	0.01220	0.00969
	BTB-00922140	4	82550244	POU6F2	54,944	0.01070	0.00969
	ARS-BFGL-NGS-57462	25	8086468	LOC538487	131,274	0.01030	0.00969

Note: Heritability and threshold were obtained using the LASSO method. Nearest gene are symbols of gene full name in the NCBI database (http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/).

ISSN: 1471-2164