Skip to main content

Table 6 Genome-wide significant SNPs for feet and legs and the component traits

From: Genome wide association studies for body conformation traits in the Chinese Holstein cattle population

Trait

SNP name

Chr.

Position (bp)

Nearest gene

Distance (bp)

Heritability/-log10(P)b

Threshold

Feet and legs

Hapmap48847-BTA-67772

3

48281407

RWDD3

116,751

0.01530

0.00948

ARS-BFGL-NGS-76581

27

39783292

OXSM

78,430

0.01290

0.00948

Hapmap53251-rs29027216

13

68437003

DHX35

within

0.01050

0.00948

Hapmap49594-BTA-39447a

1

20165566

LOC101905904

within

6.54b

6.02c

Bone quality

BTA-87372-no-rs

1

30724028

LOC100337296

420,082

0.00967

0.00949

BTA-117758-no-rs

15

72591774

C8H9orf30

112,905

0.00964

0.00949

Foot angle

ARS-BFGL-NGS-18261

2

1896078

PLEKHB2

within

0.01010

0.00929

ARS-BFGL-NGS-73625

3

14218748

NES

3,146

0.01060

0.00929

Hapmap48448-BTA-71823

4

100663967

MTPN

37,399

0.00943

0.00929

ARS-BFGL-NGS-113718

22

2655659

CMC1

29,461

0.01120

0.00929

Rear leg side view

ARS-BFGL-NGS-97763

2

113852386

DOCK10

within

0.01020

0.00942

Hapmap29973-BTA-129162

14

46264806

PAG1

71,476

0.00978

0.00942

UA-IFASA-4800

24

31524371

ZNF521

151,162

0.01230

0.00942

 

Hapmap52451-rs29021142a

1

138784934

KCNH8

106,181

6.25b

6.02c

  1. Note: Heritability and threshold were obtained using the LASSO method; -log10(P) was calculated using SMMA. aSNP detected by SMMA only; b-log10(P) obtained from SMMA; cthreshold of SMMA. Nearest gene are symbols of gene full name in the NCBI database (http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/).