Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort, Marchantia polymorpha

Table 1 Number of genes/transcripts encoding TFs for various organisms

Plant type	Class	Organism	TF encoding gene/*transcripts
Red algae	Rhodophytes	Cyanidioschyzon merolae	157
Red algae	Rhodophytes	Galdieria sulphuraria	213
Green algae	Prasinophytes	Micromonas pusilla CCMP1545	309
		Micromonas sp. RCC299	350
		Ostreococcus lucimarinus	255
		Ostreococcus tauri	227
	Chlorophytes	Chlorella sp. NC64A	321
		Chlamydomonas reinhardtii	367
		Coccomyxa sp. C-169	283
Liverwort	Marchantiopsida	Marchantia polymorpha	3471*
Moss	Bryopsida	Physcomitrella patens	1423
Spike-moss	Lycopodiophyte	Selaginella moellendorffii	949
Angiosperms	Monocots	Oryza sativa subsp. indica	2502
		Oryza sativa subsp. japonica	3119
		Sorghum bicolor	2312
		Zea mays	5246
	Eudicots	Arabidopsis lyrata	2268
		Arabidopsis thaliana	2757
		Carica papaya	1538
		Populus trichocarpa	3078
		Vitis vinifera	1799

Numbers of TF encoding genes were taken from PlnTFDB for all organisms except M. polymorpha. *For M. polymorpha, it is number of TF encoding transcripts generated from our transcriptome sequencing dataset.

ISSN: 1471-2164