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Table 2 TF gene percentages for various algae, liverworts, mosses and higher plants

From: Transcriptome-wide profiling and expression analysis of transcription factor families in a liverwort, Marchantia polymorpha

Plant type

Organism

Predicted total gene number

Predicted TF gene number

Predicted TF gene percentage

References

Red algae

Cyanidioschyzon merolae

5,331

157

2.9

[40, 42]

Galdieria sulphuraria

5,872

213

3.6

[40, 43]

Green algae

Micromonas pusilla CCMP1545

8,616

309

3.5

[40, 44]

Micromonas sp. RCC299

10,109

350

3.4

[40, 45]

Ostreococcus lucimarinus

7,651

255

3.3

[40, 46]

Ostreococcus tauri

7,725

227

2.9

[40, 47]

Chlorella sp. NC64A

9,791

321

3.2

[40, 48]

Chlamydomonas reinhardtii

16,709

367

2.1

[13, 40]

Coccomyxa sp. C-169

9,851

283

2.9

[40, 49]

Liverwort

Marchantia polymorpha

~20000 (46,533 transcripts)*

3,471*

7.4

 

Moss

Physcomitrella patens

35,938

1,423

3.9

[39, 40]

Spike-moss

Selaginella moellendorffii

22,285

949

4.2

[40, 50]

Angiosperms

Oryza sativa subsp. indica

55,615

2,502

4.4

[40, 51]

Oryza sativa subsp. japonica

50,000

3,119

6.2

[40, 52]

Sorghum bicolor

36,338

2,312

6.3

[13, 40]

Zea mays

125,435

5,246

4.1

[13, 37]

Arabidopsis lyrata

32,670

2,268

6.9

[40, 53]

Arabidopsis thaliana

32,825

2,757

8.3

[13, 40]

Carica papaya

27,793

1,538

5.5

[40]http://www.plantgdb.org/CpGDB/

Populus trichocarpa

45,555

3,078

6.7

[13, 40]

 

Vitis vinifera

30,434

1,799

5.9

[13, 40]

  1. List of number of TF-encoding genes and total number protein-coding genes in various organisms. *denotes the number of transcripts encoding for TFs for M. polymorpha. This number also includes the alternatively spliced variants and non-coding transcripts whereas else all refers to the number of protein-coding genes.