Table 1 List of BAC probes used in the analysis covering fertility-related genes in dog genome (canFam3)

CH82-27F18

chr27:40192610-40366638

AKAP3

Baccetti, B. et al., Hum Reprod 20, 2790–4 (2005)

CH82-334A11

chrX:7765138-7950438

AMELX

Belangero S.I. et al., Fertil Steril 91(6):2732 (2009)

CH82-65N01

chr20:56704541-56944568

AMH

Behringer, R.R. et al., Endocrinology 140, 5789–96 (1999)

CH82-11J15

chr27:1694095-1903282

AMHR2

Mishina, Y. et al., Genes and Development 10, 2577–2587 (1996)

CH82-407I16

chr1:100742919-100931191

AURKC

Kimmins, S. et al., Mol Endocrinol 21, 726–39 (2007)

CH82-305N04

chr25:7711226-7886381

BRCA2

Zhoucun, A. et al., Eur J Obstet Gynecol Reprod Biol 124, 61–4 (2006)

CH82-368C17

chr30:10463213-10662079

CATSPER2

Carlson, A.E. et al., J Biol Chem 280, 32238–44 (2005)

CH82-253P13

chr23:26086962-26275904

DAZ1

Ferlin, A. et al., J Med Genet 42, 209–13 (2005)

CH82-297B18

chrX:35709014-35892273

DBY

Kamp, C. et al., Mol Hum Reprod 7, 987–94 (2001)

CH82-445I13

chr14:35426377-35621549

DNAH11

Zuccarello, D. et al., Hum Reprod 23, 996–1001 (2008)

CH82-321J09

chr20:50322273-50530852

DNM2

Kusumi N. et al., Cell Struct Funct 32(2):101–13 (2007)

CH82-440F04

chr15:29579158-29772026

KITLG

Galan, J.J. et al., Hum Reprod 21, 3185–92 (2006)

CH82-405N09

chr35:18700928-18891574

MBOAT1

Dauwerse, J.G. et al., Eur J Hum Genet 15, 743–51 (2007)

CH82-124P21

chrX:1890901-2116844

PRKY

Beaulieu Bergeron M. et al., Sex Dev 5(1):1–6 (2011)

CH82-201N14

chrX:107062196-107233557

RBMYA1

Ferlin, A. et al., Hum Reprod 14, 1710–6 (1999)

CH82-209K14

chr18:52294310-52482357

SF1

Wada, Y. et al., Fertil Steril 85, 787–90 (2006)

CH82-324I01

chr6:39621314-39791666

SOX8

O’Bryan, M.K. et al., Dev Biol 316, 359–70 (2008)

CH82-26I08

chr9:8216019-8376420

SOX9

Wagner, T. et al., Cell 79, 1111–20 (1994)

CH82-74B17

chr34:37043606-37239097

SPATA16

Dam, A.H. et al., Am J Hum Genet 81, 813–20 (2007)

CH82-509B23

chr5:30594052-30773674

TEKT1

Zuccarello, D. et al., Hum Reprod 23, 996–1001 (2008)

CH82-393J06

chr12:71836296-72027577

TSPY1

Vodicka, R. et al., Reprod Biomed Online 14, 579–87 (2007)

CH82-53P08

chrX:35486398-35688401

USP9Y

Kuo, P.L. et al., Fertil Steril 81, 1034–40 (2004)

CH82-488G17

chrX:38803472-38976270

UTY

Foresta, C. et al., Hum Mol Genet 9, 1161–9 (2000)