TIPMaP: a web server to establish transcript isoform profiles from reliable microarray probes

BMC Genomics

Table 1 Distribution of transcript-specific probes and transcript-specific probe-clusters across platforms

No. of transcript-specific probes	No. of transcript specific probe-clusters
	HG U133 Plus 2		Mouse 430 2		HG U133 A		MG U74 Av2		Rat 230 2
	STGs*	MTGs**	STGs	MTGs	STGs	MTGs	STGs	MTGs	STGs	MTGs
1	129	363	120	143	86	185	67	32	150	83
2	104	192	108	69	61	107	70	27	128	42
3	77	106	80	51	40	53	91	22	107	21
4	95	88	103	48	58	39	49	15	129	15
5	83	60	78	28	51	26	42	10	139	13
6	108	68	112	16	82	47	44	9	158	10
7	147	49	131	23	110	22	56	7	184	6
8	252	63	189	32	181	33	55	11	267	19
9	444	87	308	33	365	51	73	7	510	14
10	910	137	617	48	718	77	54	9	1029	33
11	4850	662	7006	398	3475	342	88	12	5973	135
> = 12	4734	383	5007	219	1941	130	5587	219	2565	40
Total no. of transcripts***	*11933*	*2258*	*13859*	*1108*	*7168*	*1112*	*6276*	*380*	*11339*	*431*
*Total no. of genes*	*11933*	*1773*	*13859*	*892*	*7168*	*953*	*6276*	*340*	*11339*	*385*
*Total no. of transcript specific probes*	*195511*	*21305*	*218403*	*11436*	*101603*	*9327*	*102472*	*4473*	*99287*	*1903*

*STGs: transcripts from single-transcript-genes (transcripts to which the probe-clusters uniquely map).
**MTGs: transcripts from multi-transcript-genes (transcripts to which the probe-clusters uniquely map).
***Total number of transcript-specific probe-clusters is same as total number of transcripts.

ISSN: 1471-2164