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Table 2 Assembly and annotation statistics

From: The genome of Romanomermis culicivorax: revealing fundamental changes in the core developmental genetic toolkit in Nematoda

Metric

Result

Contigs >100bp span

267,342,457bp

Scaffolds >500bp span

322,765,761bp

Num. contigs/scaffolds

62,537

N50 contigs/scaffolds >500bp

17,632 bp

N50 scaffolds >500bp

29,995bp

Max contig length

28,847bp

Max scaffold length

201,054bp

Mean transcript length

593bp

Mean protein length

190aa

MAKER AUGUSTUS predictions

12,026 proteins

MAKER SNAP predictions

36,145 proteins

Num. ESTs (isogroups)

22,418 ESTs

Mean EST length

330bp

80% BLAT sequence coverage

21,204 ESTs

CEGMA compl. completeness

75.40%

CEGMA Group 1 part. compl.

81.82%

CEGMA Group 2 part. compl.

91.07%

CEGMA Group 3 part. compl.

91.80%

CEGMA Group 4 part. compl.

95.38%