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Table 2 Summary of de novo assembly of the catfish liver transcriptome with infection of ESC generated by Illumina sequencing and assembled with Trinity

From: Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

Number of non-redundant contigs

232,338

Large contigs (≥1,000 bp)

51,601

Length of the largest contig

18,759 bp

N50 size

1900 bp

Average length of non-redundant contigs

825 bp

% reads mapped to the final reference

91.68%

Number of contigs with hits

55,130

Unigene matches

22,126

Known gene matches

15,599

Unknown hypothetical gene matches

6,527

  1. Contigs were used as queries for BLAST searches against Zebrafish and NR protein databases. The cut-off value for gene identity was set at e-value ≤ 1e-5.