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Table 5 Identification of SNPs and significant SNPs (allele frequencies statistically different between the resistant and susceptible groups) from the assembled catfish liver transcriptome

From: Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

Total number of SNPs

513,371

Number of contigs containing SNPs

31,646

Number of significant SNPs

56,419 (10.99%)

Number of contigs containing significant SNPs

11,249

Number of contigs with significant hits to genes

5,480

Number of genes containing significant SNPs

4,304

Number of genomic scaffolds containing significant SNPs

2,096