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Table 5 Identification of SNPs and significant SNPs (allele frequencies statistically different between the resistant and susceptible groups) from the assembled catfish liver transcriptome

From: Bulk segregant RNA-seq reveals expression and positional candidate genes and allele-specific expression for disease resistance against enteric septicemia of catfish

Total number of SNPs 513,371
Number of contigs containing SNPs 31,646
Number of significant SNPs 56,419 (10.99%)
Number of contigs containing significant SNPs 11,249
Number of contigs with significant hits to genes 5,480
Number of genes containing significant SNPs 4,304
Number of genomic scaffolds containing significant SNPs 2,096