Methods | H3K4me3 | H3K36me3 | H3K27me3 | |||
---|---|---|---|---|---|---|
 | ESC enriched | NPC enriched | ESC enriched | NPC enriched | ESC enriched | NPC enriched |
Linear normalization | 5738 (87.9%)* | 913 (61.4%) | 779 (29.9%) | 1403 (58.7%) | 3483 (77.2%) | 495 (50.9%) |
NEB normalization | 6912 (78.2%) | 621 (71.3%) | 951(25.6%) | 1080 (70.8%) | 3664 (72.3%) | 428 (55.1%) |
Quantile normalization | 3918 (98.3%) | 2611 (31.3%) | 526 (43.3%) | 1952 (35.9%) | 2875 ( 85.8%) | 793 (38.8%) |
Non-normalization | 6959 (78.2%) | 680 (70.3%) | 741 (31.4%) | 1409 (58.5%) | 3266 (79.7%) | 519 (49.3%) |
ChIPDiff | 12975 | 1767 | 1157 | 1227 | 3832 | 888 |