Table 1 The characterized fusion or splicing peptides identified from the MS/MS data.
From: Identification of gene fusions from human lung cancer mass spectrometry data
| Â | Peptide | Gene | No. X!Tandem | No. Omssa | Â | Â |
|---|---|---|---|---|---|---|
Fusion | EQISENPTEATDIDFIR | PTPN12:HSP90AA1 | 5 | 9 | A | D |
Fusion | VIFMDGNGYISAAELR | HN1:CALM1 | 9 | 3 | A | D |
Fusion | IMGIPEEEQMVLSR | MYH9:ALK | 4 | 5 | A | D |
Fusion | ENVGLEEEQQALQK | PDIA6:TPM2 | 3 | 6 | A | D |
Fusion | AVFVDLEPTVIGGGSVR | TUBA1C:PCGF2 | 5 | 3 | A | D |
Fusion | AAEDDEFTHLYTLIVRPDNTYEVK | GPR115:CALR | 2 | 5 | A | D |
Fusion | EDSELLISSWLVTDR | DOCK9:BAZ1A | 3 | 2 | A | D |
Fusion | AVQQELDDLLVDLDHQR | TGFBI:MYH9 | 2 | 2 | A | D |
Fusion | QVTNFLSSINEEITPR | FGFR1:BCR | 1 | 2 | A | D |
Fusion | ERPAPGQAVLSGGTTMYPGIADR | ACO2:ACTB | 1 | 2 | A | D |
Fusion | LSAASTWLEDEGVGATTVLFK | HYOU1:HMGA1 | 1 | 1 | A | D |
Fusion | AVFVDLEPTVIEPVR | TUBA1A:PTPN13 | 1 | 1 | A | D |
Fusion | EAREVIELTK | CLCN3:SMNDC1 | 4 | 5 | B | D |
Fusion | NKAEILELAGNAAR | ATP2B4:H2AFY | 3 | 3 | B | D |
Fusion | EAKGESGPSGPAGPTGAR | USP6:COL1A1 | 3 | 2 | B | D |
Fusion | GRTGDAGPVGEAGAAGPAGPAGPR | COL1A1:COL1A2 | 1 | 2 | B | D |
Fusion | AKQEPEVNGGSGDAVPSG NEVSENMEEEEEALSLMK | NASP:WIPF1 | 1 | 2 | B | D |
Fusion | AHSEEPMEIFVDDETK | ESPN:BAT1 | 4 | 6 | C | D |
Fusion | TTGIVMDSGDGVTHTVPDASRVP | ACTB:GNAS | 1 | 1 | C | D |
Splicing | INGGGGGSVPGIER | HNRNPM | 12 | 0 | A | Â |
Splicing | GDVEEDETIPDSPSVLETIR | TNPO1 | 2 | 6 | A | D |
Splicing | GGSGYGDLGGPIITTQVTIPK | HNRNPK | 3 | 3 | A | D |
Splicing | RVEDEVNSGVGQDGSLLSSPFLK | SLC35A4 | 2 | 2 | B | D |