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Table 4 Neck modules detected through the Web server in phages classified in the NCBI database but not in Aclame

From: Automated classification of tailed bacteriophages according to their neck organization

 

Type 1

Type 2

Type 3

Type 4

Total

Percentage in NCBI

Siphoviridae

278

   

278 (244 annotated as Siphoviridae)

94

Myoviridae

81

75

  

156 (138 annotated as Myoviridae)

85

Podoviridae

  

116

10

126 (101 annotated as Podoviridae)

99

Total

359

75

116

10

560

93

  1. Percentages are calculated within the Siphoviridae, Myoviridae and Podoviridae subfamilies described by the NCBI. Total percentage corresponds to the number of assigned phages (560) compared to the total number of Caudovirales and unclassified phages of the analyzed NCBI database (624–19 non tailed bacteriophages =605).