From: Beyond cleaved small RNA targets: unraveling the complexity of plant RNA degradome data
Group | Librarya | Regionb | Motifc | E-valued | Positione | Sitef |
---|---|---|---|---|---|---|
1 RTGATGA | TWF (At) | IGR | KRTGATGA | 7.60E-22 | 5 | 28(1000) |
Tx4F (At) | intron | RATGATGA | 2.00E-06 | 4 | 13(770) | |
INF9311a (Os) | intron | RTGATGA | 7.70E-05 | 6 | 20(817) | |
NPBs (Os) | IGR | DRTGATGA | 6.40E-24 | 5 | 37(1000) | |
NPBs (Os) | intron | RTGATGAD | 2.00E-11 | 6 | 20(1000) | |
2 TGTAHAKA | TWF (At) | 3′UTR | TGTAHATA | 2.00E-82 | 4 | 110(1000) |
Tx4F (At) | 3′UTR | TGTAHAKW | 4.40E-52 | 3 | 72(1000) | |
INF9311a (Os) | intron | YTGTAMAK | 1.10E-21 | 3 | 55(817) | |
INF9311a (Os) | CDS | TGTACAG | 1.20E-07 | 4 | 27(1000) | |
INF9311a (Os) | 3′UTR | YTGTAHAK | 1.00E-376 | 3 | 320(1000) | |
INF939 (Os) | 3′UTR | HTGTAMWK | 3.50E-135 | 3 | 119(1000) | |
NPBs (Os) | 3′UTR | YTGTAMAK | 1.30E-164 | 3 | 174(1000) | |
NPBs (Os) | IGR | TGTAHAKW | 5.70E-26 | 4 | 62(1000) | |
NPBs (Os) | intron | TGTACAKA | 1.30E-22 | 4 | 55(1000) | |
3 AATAAA | Tx4F (At) | 3′UTR | AAYAAARV | 2.30E-10 | 4 | 60(1000) |
4 CACACACA | INF939 (Os) | CDS | CACACACA | 1.10E-01 | -1 | 15(599) |
INF939 (Os) | 3′UTR | CACACACA | 2.70E-01 | -1 | 9(1000) | |
5 ATGTATGT | Col-0 (At) | 3′UTR | ATGTATGT | 1.70E-38 | -1 | 103(499) |
6 GTCTRGTG | Tx4F (At) | IGR | GTCTRGTG | 6.10E-05 | 16 | 12(1000) |
7 CAGAC | NPBs (Os) | 3′UTR | MCAGAC | 5.60E-02 | 1 | 40(1000) |
8 AAAAAAAA | INF9311a (Os) | IGR | AAAAAAAA | 2.40E-07 | 12 | 16(1000) |
9 GTCCGAC | Tx4F (At) | CDS | AGTCCGAC | 9.20E-21 | -8 | 35(1000) |
INF9311a (Os) | CDS | AGYCCGAC | 1.50E-64 | -8 | 81(1000) | |
INF939 (Os) | CDS | AGTCCGAC | 4.60E-31 | -8 | 60(599) | |
INF939 (Os) | 3′UTR | RSYCCRAC | 1.30E-07 | -8 | 59(1000) | |
NPBs (Os) | CDS | ASKCCGAC | 8.90E-258 | -8 | 298(1000) | |
NPBs (Os) | 3′UTR | VBCCGACH | 8.90E-51 | -7 | 85(1000) | |
NPBs (Os) | intron | SKCCGACH | 1.10E-09 | -7 | 30(1000) | |
10 GATCCAAC | AxIDT (At) | 3′UTR | GATCCAAM | 4.50E-03 | -8 | 10(793) |
AxIRP (At) | CDS | GRTCCAAC | 1.00E-126 | -8 | 121(1000) | |
AxIRP (At) | 5′UTR | RATCCAAC | 5.00E-19 | -8 | 49(1000) | |
AxIRP (At) | intron | GRTCCAAC | 7.10E-01 | -8 | 18(1000) | |
AxSRP (At) | CDS | GATCCAAC | 8.40E-40 | -8 | 45(1000) | |
AxSRP (At) | 5′UTR | GATCCAAC | 9.80E-07 | -8 | 22(1000) | |
AxSRP (At) | intron | GATCCAAC | 3.70E-01 | -8 | 15(1000) | |
11 GACGATC | Col-0 (At) | 3′UTR | VMGACGAT | 3.40E-02 | -9 | 15(499) |
ein5 (At) | 3′UTR | CGACGATY | 3.20E-06 | -8 | 23(153) | |
ein5 (At) | CDS | SGACGWTY | 1.50E-03 | -8 | 17(476) |