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Table 3 Categorization and abundance of transcripts detected with RNA-seq

From: Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling

Summary Lib 1 Lib 2 Lib 3 Lib 4 Lib 5 Lib 6 Lib 7
Total raw reads 8312677 7422797 7462817 7695810 8268795 7329570 7907043
Reads mapped to reference 5851955 5306235 5018702 5399517 6182990 5269488 5751263
Alignment 6467410 5758740 5324164 6623514 7615114 6899562 6842041
Unique mapped reads 5236500 4853730 4713240 4175521 4750866 3639414 4660485
Reads in gene region 4810502 4465738 4342745 3816552 4353451 3287048 4261630
Genes with ≥1 reads 21497 21537 21295 21160 21632 21336 22033
Gene # when RPKM is at least 1 14972 14452 14678 13924 14369 15037 14673
  1. Lib 1-7: CK60, BTx623, San Chi San, China17, KS78, high- and low-NUE RIL bulk libraries respectively.
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BMC Genomics

ISSN: 1471-2164

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