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Table 5 List of DEG transcripts abundant in sensitive genotypes

From: Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling

   Log(FC) = log2(sensitive/tolerant genotype)
Gene annotation Gene id 1/3 1/4 1/5 1/6 2/3 2/4 2/5 2/6 7/3 7/4 7/5 7/6
Flavanoids and stilbene biosynthesis              
Chalcone and stilbene synthase Sb07g004700 3.9 5.0 8.4 3.4 3.1 4.2 7.5 2.6 ** ** 6.8 **
Choline monooxygenase Sb10g028700 5.0 6.0 7.1 ** 4.2 5.2 6.4 ** 4.4 5.5 6.6 **
Polyamine oxidase 1, Flavin-containing domain Sb07g005780 3.9 4.2 2.6 1.9 3.2 3.5 1.9 ** 3.4 3.7 2.0 1.3
Leucoanthocyanidin dioxygenase Sb06g014550 3.3 3.0 ** 2.9 2.8 2.5 ** 2.4 2.2 1.9 ** 1.8
Anthocyanidin 5,3-O-glucosyltransferase Sb09g026280 ** ** 3.2 3.7 ** ** 2.5 2.9 ** 2.4 2.8 3.3
CYP71A25 cytochrome P450, Sb07g000550 11.8 7.5 4.8 4.9 8.7 4.5 1.7 1.8 10.2 5.9 3.1 3.2
CYP87A2 cytochrome P450, Sb05g004900 7.6 ** 7.7 3.5 6.6 ** 6.6 2.4 6.0 ** 6.1 **
Glutathione S-transferase Sb04g003850 9.3 9.2 7.0 ** 9.6 9.5 7.3 1.9 9.1 9.1 6.8 **
Cell wall metabolism              
Beta-1,3-glucanase Sb08g019670 3.9 3.9 ** 3.3 2.1 2.2 ** ** 2.2 2.2 ** **
Beta-expansin Sb10g028070 2.8 3.9 ** 2.6 ** 2.6 ** ** 2.3 3.5 ** 2.1
Peroxin 13 Sb02g003110 2.5 2.2 ** ** 2.5 2.2 ** 1.6 2.0 1.7 ** **
Peroxidase superfamily protein Sb09g020980 9.8 ** ** 4.0 8.4 ** ** 2.6 8.5 ** ** 2.6
Peroxidase superfamily protein Sb09g021000 3.8 ** ** 3.4 2.5 ** ** 2.1 2.6 ** ** 2.2
Alpha/beta-Hydrolases Sb10g021250 10.1 10.0 ** 3.5 8.8 8.7 ** 2.2 9.0 8.9 ** 2.4
Alpha/beta-Hydrolases Sb1306s002010 7.2 7.9 ** 3.8 6.3 7.0 ** 2.9 6.0 6.7 ** 2.6
Glycosyl hydrolases family 17 Sb08g019670 3.9 3.9 ** 3.3 2.1 2.2 ** ** 2.2 2.2 ** **
Chitinase A glycosyl hydrolase Sb05g023710 2.7 ** ** 1.9 2.3 ** ** 1.5 2.3 ** ** 1.5
Phytohormones              
SAUR-like auxin-responsive protein Sb06g001800 ** 3.5 ** 3.6 ** ** ** 3.4 3.6 3.5 ** 3.5
Auxin response factor 2 (ARF 2) Sb06g011767 6.5 6.5 ** ** 7.3 7.3 ** 2.2 7.8 7.7 ** 2.6
Auxin-induced protein 5NG4 Sb04g000450 3.8 5.5 ** 8.0 3.2 4.8 ** 7.3 ** ** ** **
Cytokinin-O-glucosyltransferase 2 Sb06g018490 12.4 7.5 ** 2.9 12.4 7.6 ** 2.9 12.1 7.2 ** 2.5
Kinases              
CRK55, Cystein rich RLK 55 Sb01g039360 ** 2.2 2.1 ** ** 1.3 1.2 ** 2.0 2.3 2.2 **
PR5-like receptor kinase Sb03g025630 ** 4.1 3.5 ** ** 3.7 3.0 ** ** 4.7 4.0 **
Protein kinase superfamily protein Sb01g041910 3.2 ** ** 3.2 3.2 ** ** 3.1 2.4 ** ** 2.4
S-locus lectin protein kinase Sb09g001750 ** ** 5.9 ** 2.9 3.6 7.3 ** ** 2.3 5.9 **
PEP1 receptor-1 kinase Sb07g021940 3.0 4.1 ** ** 2.9 4.0 ** 1.8 1.9 3.1 ** **
Transcription factors              
MYB-like transcription factor Sb09g030390 2.9 4.2 ** 2.4 1.7 2.9 ** ** ** 2.4 ** **
AP2/B3-like transcriptional factor Sb01g014400 4.4 4.2 2.5 ** 6.0 5.7 4.1 1.8 3.2 2.9 ** **
Auxin response factor 2 Sb06g011767 6.5 6.5 ** ** 7.3 7.3 ** 2.2 7.8 7.7 ** 2.6
SAUR-like auxin-responsive protein Sb06g001800 ** 3.5 ** 3.6 ** ** ** 3.4 3.6 3.5 ** 3.5
  1. The transcriptional abundance of DEGs from 12 pair-wise comparisons (1/3, 1/4, 1/5, 1/6, 2/3, 2/4, 2/5, 2/6, 7/3, 7/4, 7/5, and 7/6) made between three sensitive genotypes [CK60 (1), BTx623 (2) and the low-NUE bulk (7)] with each of the four with each of the four tolerant genotypes [San Chi San (3), China17 (4), KS78 (5) and the high-NUE bulk (6)] were summarized. **Not significant when FDR ≤ 0.001; Log(FC) is the log2 ratio of gene transcript between sensitive and tolerant genotypes; If Log(FC) >0, positive values indicate transcript is abundant in sensitive genotypes.