Skip to main content

Table 6 List of DEG transcripts abundant in tolerant genotypes

From: Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling

   Log(FC) = log2(sensitive/tolerant genotype)
Gene annotation Gene id 1/3 1/4 1/5 1/6 2/3 2/4 2/5 2/6 7/3 7/4 7/5 7/6
Ankyrin repeat Sb07g002190 -7.5 -8.4 -7.7 -6.9 ** ** ** ** ** -3.0 -2.2 **
LHT1 lysine histidine transporter 1 Sb01g038720 -7.0 -7.7 ** -6.7 -7.0 -7.6 ** -6.7 ** ** ** **
SEC14 cytosolic factor Sb05g026380 -7.8 -6.4 -7.7 ** -3.7 ** -3.6 ** ** ** ** **
Drought induced 19 protein Sb04g013790 -3.8 -4.6 ** -3.2 -2.3 -3.1 ** -1.7 ** -2.3 ** **
Translation elf- Tu Sb02g007166 -4.7 -4.6 ** -4.5 -4.1 -4.0 ** -3.9 -2.4 -2.3 ** **
BTB-POZ and MATH domain 1 Sb07g026735 -5.1 -5.6 ** ** -7.3 -7.8 ** -6.5 ** -2.3 ** **
Ribosomal protein (L16p/L10e) Sb01g036330 -2.7 -3.4 -2.3 -2.0 ** -1.7 ** ** ** -1.4 ** **
Glutathione S-transferase Sb09g003700 -2.1 -2.6 ** ** -2.4 -3.0 ** -1.3 -1.9 -2.5 ** **
Phosphatases Sb08g019110 -2.1 -2.9 -2.1 -2.0 -2.9 -3.6 -2.9 -2.8 ** -1.6 ** **
Leucine-rich receptor-like kinase Sb04g003840 -2.7 -2.6 -2.7 ** -1.9 -1.8 -1.9 ** ** ** -1.5 **
Phosphoglycerate mutase Sb06g000380 -3.4 -3.3 ** -3.6 ** -1.5 ** -1.7 ** ** ** -1.3
RmlC-like cupins Sb01g019830 -3.5 -5.0 -3.2 -3.2 ** -2.1 ** ** ** -2.0 ** **
Homeobox associated leucine zipper Sb07g029150 -3.6 -2.7 ** ** -4.2 -3.4 -3.1 -2.8 ** ** ** **
Expressed protein Sb08g019270 -3.7 -3.7 ** -3.0 -3.9 -4.0 ** -3.3 ** ** ** **
Transducin Sb04g022100 -3.8 -3.6 ** -3.3 -3.2 -2.9 ** -2.6 ** ** ** **
Expressed protein Sb04g000700 -3.9 -3.9 ** ** -6.9 -6.9 ** ** -3.5 -3.5 ** **
Trypsin family protein with PDZ domain Sb08g015916 -4.3 ** ** -4.9 -4.2 ** ** -4.8 -3.1 ** ** -3.7
3-oxo-5-alpha-steroid 4-dehydrogenase Sb02g003510 -4.9 -4.5 ** -3.2 -3.2 -2.8 ** -1.6 -2.8 -2.4 ** -1.1
F-box domain containing protein Sb02g001640 -5.4 ** ** -4.4 -5.3 ** ** -4.3 -3.5 ** ** -2.4
DNA binding transposon protein Sb05g020750 -7.0 -7.4 ** -7.4 -7.0 -7.3 ** -7.3 ** -2.6 ** **
Expressed protein Sb04g000690 -7.7 -7.9 ** -7.0 -7.6 -7.9 ** -7.0 -5.5 -5.8 ** -4.9
Leucine Rich Repeat family protein Sb06g001645 -7.9 -7.6 ** -7.2 -7.9 -7.5 ** -7.1 ** ** ** **
Expressed protein Sb04g012640 -8.3 ** ** -8.2 -6.0 ** ** -5.9 -3.9 ** ** -3.7
Cell wall invertase 2 Sb0067s002240 -9.1 -7.4 ** -7.1 -6.7 -5.1 ** -4.8 -3.5 ** ** **
Hypothetical protein Sb04g012541 -9.1 ** ** -9.3 -9.0 ** ** -9.3 -4.2 ** ** -4.5
Cupin domain containing protein Sb07g005307 ** -2.9 ** ** -7.7 -9.2 -8.0 -7.9 ** -2.7 ** **
UDP-Glycosyltransferase Sb04g027470 ** ** ** ** -6.2 -4.5 -5.2 -4.3 -2.3 ** -1.2 **
  1. The transcriptional abundance of DEGs from 12 pair-wise comparisons (1/3, 1/4, 1/5, 1/6, 2/3, 2/4, 2/5, 2/6, 7/3, 7/4, 7/5, and 7/6) made between three sensitive genotypes [CK60 (1), BTx623 (2) and the low-NUE bulk (7)] with each of the four tolerant genotypes [San Chi San (3), China17 (4), KS78 (5) and the high-NUE bulk (6)] were summarized. **Not significant when FDR ≤ 0.001; Log(FC) is the log2 ratio of gene transcript between sensitive and tolerant genotypes; If Log(FC) <0, negative values indicate transcript is abundant in tolerant genotypes.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us