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Figure 3 | BMC Genomics

Figure 3

From: A pipeline for the de novo assembly of the Themira biloba(Sepsidae: Diptera) transcriptome using a multiple k-mer length approach

Figure 3

Frequency distribution of transcript lengths by assembly. A plot of the quantity of transcripts with a given length per assembly shows differences in assembly output and a pronounced peak representing the median transcript length. The meta-assembly was generated by the re-assembly of all k-mer lengths using CAP3. Meta-assembly improved transcript length, as indicated by the leading edge of the graph. Meta-assembly also reduced the number of short contigs, compared to the single k-mer assemblies. Trinity automatically removes contigs smaller than 200 base pairs.

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