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Table 1 List of papaya miRNAs identified in this study

From: Sex specific expression and distribution of small RNAs in papaya

MiRNA family

miR_sequence

Strand

Chromosome

miR location

CpmiR397

UCAUUGAGUGCAGCGUUGAUGU

-

Supercontig_27

1548952..1548973

CpmiR398a

UGUGUUCUCAGGUCACCCCUU

+

Supercontig_1

1672760..1672780

CpmiR398b

UGUGUUCUCAGGUCGCCCCUG

+

Supercontig_34

1614486..1614506

CpmiR399a

UGCCAAAGGAGAUUUGCCCGG

+

Supercontig_7

849330..849350

CpmiR399b

UGCCAAAGGAGAUUUGCCCGG

-

Supercontig_7

855497..855517

CpmiR399c

UGCCAAAGGAGAGUUGCCCUG

+

Supercontig_4

3751380..3751400

CpmiR403

UUAGAUUCACGCACAAACUCG

n/a

n/a

n/a

CpmiR894

CGUUUCACGUCGGGUUCACC

n/a

n/a

n/a

CpmiR2111

UAAUCUGCAUCCUGAGGUUUA

+

Supercontig_171

301214..301234

CpmiR2910

UAGUUGGUGGAGCGAUUUGUC

+

Supercontig_0

2421938..2421958

CpmiR-novel_36

UGGUCAACUUCACUAAUGCUUU

+

Supercontig_140

285663..285642

CpmiR-novel_37

AGAUAAAUCAGAGGAUCUAACC

+

Supercontig_27

1714759..1714738

CpmiR-novel_38

UUGCCAUUGCUGUCAUCAUUG

-

Supercontig_26

1264911..1264891

CpmiR-novel_39

UUCGCCAGCCAUUCACAAAAU

-

Supercontig_67

294009..293989

CpmiR-novel_40

UGCAGUAUCUGUAGCAUCAGC

+

Supercontig_1867

3234..3214

CpmiR-novel_41

UUAUGCAGAUACCCGGAGGAG

+

Supercontig_2379

8824..8804

CpmiR-novel_42

CAGAGGAGGAGAUGAAGAGGGA

-

Supercontig_609

25591..25570

CpmiR-novel_43

UAAGACAAAGCCUACAACAAC

-

Supercontig_92

867729..867709

CpmiR-novel_44

UGGGAUCCAGUGCAUUAGUGC

+

Supercontig_241

21475..21455

CpmiR-novel_45

AUUGGAGGACUUUGGGGGAGC

-

Supercontig_282

4156..4136

CpmiR-novel_46

UCUUGCAAGCUGCUUAGAUCA

-

Supercontig_130

392538..392518

CpmiR-novel_47

UUUCUACCCACCUUUACCUCCGUG

-

Supercontig_425

30640..30617

CpmiR-novel_48

CAGAAGUAAAGGUUGGUAGAAAA

-

Supercontig_77

529407..529385

CpmiR-novel_49

UUUUGGGACACGUGCAGGUAC

+

Supercontig_26

75358..75338

CpmiR-novel_50

CUGCGUAUAAAUUUUGCUCCG

+

Supercontig_271

79608..79588

CpmiR-novel_51

UUUCCAAAUUCUCUCGUACCGA

+

Supercontig_65

875942..875921

CpmiR-novel_52

AGGCGCACUGUGAAUCGUAUUCGG

+

Supercontig_33

742481..742458

CpmiR-novel_53

AUCUGGGCCGUCCGUGCGCAC

-

Supercontig_74

405778..405758

CpmiR-novel_54

UACCGGACGAAGUAUCGAGACGAU

-

Supercontig_246

189341..189318

  1. The novel miRNAs are named contiguous from our previous report [32].