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Table 2 Sequence information for transcripts selected for the quantitative PCR validation of oligoarray data

From: Characterization of the transcriptome and temperature-induced differential gene expression in QPX, the thraustochytrid parasite of hard clams

Sequence name

Sequence ID

Sequence description

Primer sequences

Top blast match

Acc. no.

E-value

C1A-1

qpx_c534

Cysteine peptidase

F:

ACGGCAATGTTACCGAAGAGGCTA

XP_002507788

1.6E-48

  

R:

TAGTTATCCAATGGGCCCGCGTTA

  

C1A-2

qpx_c5487

Cysteine peptidase

F:

ACTGGAGCAAGAAGGGAGCAGTAA

CBJ28832

1.9E-29

  

R:

AAGACCACCTGTGGTGGAGAAACT

  

C1A-3

qpx_c3110

Cysteine peptidase

F:

TGCAGGTCGTCGTTGCTTTAGTCT

EAY93080

3.8E-14

  

R:

TAGCCAACGATTGAAACTGCGTGG

  

S8-1

qpx_c765

Serine peptidase

F:

TCGTGCTGGACACATAGTTGTCGT

ABI79453

6.3E-30

  

R:

TATCGGTGGCTCCAACGCTTATCA

  

S8-2

qpx_c1822

Serine peptidase

F:

TATGGCTACTCCATTTGTCGCTGG

ABI79453

1.9E-29

  

R:

ACGAGCAAATTGGGAGATTCGTGC

  

S8-3

qpx_c2550

Serine peptidase

F:

AAGAGCGGTTGGGAATATGGGAGT

ABI79453

7.5E-51

  

R:

AACAACAAGCATGCCCTCTTCTGC

  

S01B

qpx_c674

Serine peptidase

F:

AGGTCTACGTATGGCTCCACTTCA

XP_002906640

1.7E-22

  

R:

TTGAGCCCACATTTCTCAGCAGGA

  

Actin

qpx_c116

Actin

F:

TGAAGATCTTGACCGAGCGTGGTT

ABC85743

1.0E-173

   

R:

AGCGGTCTTCATCTCCTGGTCAAA

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