From: Exome capture from saliva produces high quality genomic and metagenomic data
 |  | Total readsa | Unmapped reads | % Un-mapped reads | % PCR duplicates | % Mapped on target | Median target coverageb | % of variants coveredc | Autosomal SNV | Autosomal singletons | Non-ref. concordanced |
---|---|---|---|---|---|---|---|---|---|---|---|
Pilot 1 | SA006 | 69,272,282 | 9,122,731 | 13.2% | 54.2% | 63.5% | 12 | 94.9% | 25,225 | 657 | 0.9897 |
 | SA008 | 113,888,276 | 2,143,408 | 1.9% | 19.8% | 78.2% | 73 | 99.5% | 26,408 | 955 | 0.9947 |
 | SA011 | 78,006,472 | 1,664,959 | 2.1% | 33.7% | 77.4% | 40 | 99.0% | 26,365 | 67 | NA |
 | SA012 | 67,209,032 | 1,353,187 | 2.0% | 20.5% | 75.7% | 42 | 99.3% | 26,722 | 86 | NA |
 | SA035 | 85,142,498 | 5,812,851 | 6.8% | 78.0% | 79.4% | 10 | 92.1% | 24,692 | 1,726 | 0.9884 |
 | SA051 | 76,076,464 | 3,102,819 | 4.1% | 27.8% | 76.5% | 37 | 98.8% | 27,674 | 1,239 | NA |
 | SA052 | 60,375,472 | 1,247,951 | 2.1% | 12.9% | 78.2% | 41 | 98.8% | 27,779 | 755 | 0.9968 |
 | SA054 | 62,358,148 | 1,959,032 | 3.1% | 27.9% | 73.9% | 31 | 99.3% | 28,024 | 817 | 0.9956 |
 | Pilot 1 mean | 76,541,081 | 3,300,867 | 4.4% | 34.4% | 75.4% | 35.75 | 97.7% | 26,611 | 788 e | 0.9930 |
Pilot 2 | SA1000 | 77,069,730 | 8,387,491 | 10.9% | 9.5% | 57.3% | 44 | 98.4% | 27,921 | 2,483 | 0.9915 |
 | SA1001 | 85,479,934 | 3,551,500 | 4.2% | 11.4% | 74.2% | 67 | 98.7% | 27,694 | 2,318 | 0.9939 |
 | SA1002 | 92,542,846 | 4,674,919 | 5.1% | 15.5% | 70.1% | 65 | 98.8% | 27,886 | 3,286 | 0.9941 |
 | SA1006 | 83,545,692 | 4,002,665 | 4.8% | 18.1% | 74.5% | 59 | 98.4% | 27,446 | 2,442 | 0.9927 |
 | SA1010 | 87,939,484 | 4,445,502 | 5.1% | 14.5% | 71.0% | 62 | 98.6% | 27,295 | 1,782 | 0.9935 |
 | SA1011 | 82,377,158 | 7,810,714 | 9.5% | 11.6% | 49.2% | 40 | 98.5% | 27,484 | 2,717 | 0.9887 |
 | SA1025 | 81,405,650 | 2,498,412 | 3.1% | 10.0% | 87.8% | 63 | 99.3% | 28,696 | 2,676 | 0.9934 |
 | Pilot 2 mean | 84,337,213 | 5,053,029 | 6.1% | 12.9% | 69.2% | 57.14 | 98.7% | 27,775 | 2,529 | 0.9925 |