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Table 1 Summary statistics for filtered RAD loci

From: Genome-wide SNPs lead to strong signals of geographic structure and relatedness patterns in the major arbovirus vector, Aedes aegypti

 

n

T

% pol

SNP

Private

P

H O

H E

F IS

Ï€

N e

Br

17

24273

23.64

8755

2511

0.800

0.265

0.282

0.079

0.0014

23083

Au

17

25019

21.68

8026

1310

0.810

0.234

0.268

0.120

0.0012

19479

In

13

25002

20.87

7757

1423

0.809

0.253

0.270

0.083

0.0012

19230

Vi

15

22333

20.61

6877

1200

0.815

0.243

0.261

0.079

0.0011

18401

All

62

13591

70.72

18147

       
  1. n - the number of analyzed individuals from Brazil (Br), Australia (Au), Indonesia (In) and Vietnam (Vi); T - the number of RAD loci; % pol - percentage of polymorphic loci; SNP - total number of SNPs; private - the number of private SNPs; P - average frequency of the more common allele; HO, HE – observed and expected heterozygosity at polymorphic sites; FIS - fixation index across polymorphic sites; π – average nucleotide diversity (calculated across polymorphic and non-variant sites); Ne – lower range effective population size (for μ = 10-8 per site per generation).