Table 2 A selected subset of candidate virulence proteins whose expression is temperature dependent
Biological process category | Protein name | Putative function | Protein accession GMI1000 | Gene tag in GMI1000 | Profile of regulation group |
|---|---|---|---|---|---|
Metabolism | Mdh | Malate dehydrogenase. Glyoxylate cycle | 17546717 | Rsc1998 | 4 |
| Â | LeuC | Isopropylmalate isomerase large subunit. Amino acid biosynthesis leucine pathway | 17546709 | Rsc1990 | 4 |
Stress response | ClpB | ATP-dependent protease. ClpB are chaperones to proteins tagged for destruction. | 17546054 | Rsc1335 | 2 |
| Â | PpO | Polyphenol Oxidase. Contributes to resistance to phenolic compounds | 17545056 | Rsc0337 | 2 |
| Â | GroES | 10kDA chaperonin. Folding and assembly of proteins | 17545360 | Rsc0641 | 4 |
| Â | GroEL | 60kDA subunit chaperonin. Folding and assembly of proteins | 17545361 | Rsc0642 | 4 |
| Â | PhaP1 | Phasin_2 domain. Usually associates with PHB granules in bacteria. | 17546324 | Rsc1605 | 4 |
| Â | HtpG | Putative heat-shock 90. Molecular chaperone. | 17545709 | Rsc0990 | 2 |
| Â | Dps | DNA protection starvation protein. | 17547406 | Rsc2687 | 2 |
| Â | KatE/katB | Catalase I hydroperoxidase HpiI oxidoreductase. | 17549800 | Rsp1581 | 1 |
| Â | KatG | Heme-dependent peroxidase. | 17545494-495 | Rsc0775-0776 | 4 |
Transport/motility/secretion | SecB | Putative translocase. Sec dependent pathway | 17545075 | Rsc0356 | 4 |
| Â | PilQ | Porin, part of type IV twitching motility system | 17547690 | Rsc2971 | 2 |
| Â | Rsp0744 | Associated with bacterial type VI secretion apparatus secretion | 17548965 | Rsp0744 | 2 |
| Â | Hcp | Type VI secretion system translocator, Hcp1 family | 17548966 | Rsp0745 | 4 |
Unknown | Rsc1727 | Hypothetical protein with an EmrB/QacA family multidrug resistance transmembrane protein | 17546446 | Rsc1727 | 2 |
| Â | Rsp0167 | Homolog to RaxST PAMP effector in Xanthomonas oryzae pv. oryzae. | 17548388 | Rsp0167 | 2 |
Virulence | Egl | Endoglucanase. Degradation of polysaccharides | 17548383 | Rsp0162 | 3 |
| Â | Rsp0275 | Putative chitinase | 17548496 | Rsp0275 | 1 |
| Â | ChbA | Putative exoglucanase. Cellobiohydrolase A domain | 17548804 | Rsp0583 | 2 |
| Â | HrcC | Secretin of the conserved family of type III apparatus system | 17549095 | Rsp0874 | 8 |
| Â | WecC(EpsD) | Enzyme part of the exopolysaccharide operon (EpsD). | 17549237 | Rsp1016 | 8 |