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Table 4 Pairwise comparisons of differential expression of the probe sets related to seed storage protein genes at early stage of seed development i.e. 7 days after anthesis (DAA) among the four Indian wheat varieties, viz. C306 and Lok1 were good and Sonalika and WH291 were poor chapatti making varieties

From: Genome-wide transcriptome study in wheat identified candidate genes related to processing quality, majority of them showing interaction (quality x development) and having temporal and spatial distributions

Probe set ID

Function

Good vs poor

C306 vs Sonalika

C306 vs WH291

Lok1 vs Sonalika

Lok1 vs WH291

C306 vs Lok1

Sonalika vs WH291

Ta.24298.1.S1_x_at

HMW-glutenin subunit Dx5

56.7

11.0

104.8

29.6

288.6

-2.8

10.6

Ta.24963.1.S1_x_at

HMW-glutenin subunit 1By9

60.4

13.5

70.0

54.2

303.0

-3.9

4.8

Ta.131.1.S1_at

LMW-glutenin

58.9

19.7

76.7

47.2

175.0

-2.3

3.7

Ta.14625.1.S1_x_at

LMW-glutenin

106.0

39.9

121.0

90.9

313.5

-2.4

3.6

Ta.23142.5.S1_x_at

LMW-glutenin

57.8

12.3

203.0

16.6

244.2

-1.3

15.4

Ta.24114.1.S1_x_at

Alpha-gliadin

171.4

48.9

229.2

123.4

606.1

-2.6

4.4

Ta.24114.10.S1_x_at

Alpha/beta-gliadin

54.1

10.9

75.6

42.9

266.0

-4.1

6.4

Ta.27778.4.S1_x_at

Alpha-gliadin

284.7

100.7

320.4

277.7

830.2

-2.6

3.3

Ta.27778.2.S1_x_at

Alpha-gliadin

209.5

66.7

215.8

220.4

619.9

-3.3

3.2

Ta.15268.1.S1_x_at

Alpha-gliadin

110.3

39.5

175.9

69.7

319.7

-1.8

4.3

Ta.23896.1.S1_at

Omega gliadin

33.1

25.9

91.3

14.3

40.7

1.8

3.4

Ta.160.1.S1_x_at

Gamma-gliadin

14.6

20.0

21.1

9.1

11.5

1.9

1.2

Ta.160.2.S1_x_at

Gamma-gliadin

13.3

26.0

27.0

5.9

7.4

4.3

1.2

Ta.160.3.S1_x_at

Gamma-gliadin

13.6

25.7

30.6

9.5

6.0

3.5

-1.2

Ta.28792.1.S1_x_at

Gamma-gliadin

146.9

38.2

155.4

135.1

556.7

-3.5

4.4

Ta.24114.8.S1_at

Gamma-gliadin

168.9

43.7

262.7

108.0

653.5

-2.6

6.2

Ta.24114.8.S1_x_at

Gamma-gliadin

194.8

46.6

338.5

112.0

819.7

-2.4

7.4

Ta.30782.2.S1_a_at

Gamma-gliadin

28.2

13.3

37.6

21.4

60.5

-1.6

2.8

Ta.30782.2.S1_x_at

Gamma-gliadin

51.3

28.4

80.0

35.7

77.8

-1.3

2.7

Ta.30782.4.S1_at

Gamma-gliadin

98.0

24.3

186.7

53.4

415.8

-2.1

8.0

Ta.6175.1.S1_at

Gamma-gliadin

105.9

36.7

49.1

116.2

206.2

-3.3

2.7

Ta.6175.1.S1_x_at

Gamma-gliadin

80.9

28.7

58.8

95.9

238.9

-3.6

3.0

Ta.27712.1.S1_at

Avenin

86.6

26.1

156.1

50.4

297.2

-1.8

6.3

Ta.27777.1.S2_at

Avenin

57.6

18.6

51.2

57.0

158.9

-2.3

3.0

Ta.27777.1.S2_s_at

Avenin

122.6

37.7

208.4

74.7

411.7

-1.9

5.6

Ta.9799.1.S1_at

Avenin

45.0

22.0

30.3

70.4

86.5

-2.8

1.2

Ta.23142.4.S1_s_at

Gliadin/avenin

175.9

41.2

179.3

196.0

715.6

-3.8

4.0

Ta.23142.11.S1_x_at

Gliadin/avenin

124.1

39.1

98.9

143.7

417.7

-3.9

2.8

Ta.2415.2.S1_a_at

Gliadin/avenin

17.4

14.8

46.1

7.4

18.8

1.9

2.5