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Table 2 Average methylation percentage across several known imprinted genes, with GAPDH and ACTB serving as comparison regions

From: BisQC: an operational pipeline for multiplexed bisulfite sequencing

Gene

IGF2R

GRB10

PEG3

MEST

RB1

KCNQ1

GAPDH

ACTB

(CpG island location, hg19)

(chr6:160426265ā€“160427502)

(chr7:50849753ā€“50850871)

(chr19:57351284ā€“57351995)

(chr7:130130740ā€“130133111)

(chr13:48892636ā€“48893857)

(chr11:2720411ā€“2722087)

(chr12:6643262ā€“6644607)

(chr7:5569063ā€“5570594)

B02

46.4%

24.8%

38.0%

34.4%

60.9%

39.2%

1.4%

0.8%

D07

50.0%

28.5%

44.7%

33.9%

61.2%

36.9%

0.7%

0.4%

E08

57.4%

27.2%

34.1%

37.2%

56.4%

36.4%

1.8%

1.7%

G12

49.4%

24.5%

30.1%

34.3%

60.1%

36.9%

1.3%

1.0%

Sperm [29]

69.8%

45.2%

42.0%

49.9%

57.7%

50.4%

-

-