Table 3 Number of CpG sites within a given CpG island observed and mean coverage per sequenced CpG
From: BisQC: an operational pipeline for multiplexed bisulfite sequencing
Gene | IGF2R | GRB10 | PEG3 | MEST | RB1 | KCNQ1 | GAPDH | ACTB |
|---|---|---|---|---|---|---|---|---|
(CpG island location, hg19) | (chr6:160426265–160427502) | (chr7:50849753–50850871) | (chr19:57351284–57351995) | (chr7:130130740–130133111) | (chr13:48892636–48893857) | (chr11:2720411–2722087) | (chr12:6643262–6644607) | (chr7:5569063–5570594) |
CpG/average coverage | CpG/average coverage | CpG/average coverage | CpG/average coverage | CpG/average coverage | CpG/average coverage | CpG/average coverage | CpG/average coverage | |
B02 | 38/21.6X | 89/13.0X | 24/29.6X | 99/18.25X | 46/22.0X | 138/18.6X | 109/21.4X | 195/14.2X |
D07 | 20/19.3X | 48/10.8X | 24/14.7X | 78/15.2X | 38/16.3X | 77/12.5X | 97/14.6X | 145/10.1X |
E08 | 35/25.7X | 99/16.8X | 25/24.8X | 94/25.1X | 46/29.0X | 125/20.5X | 116/19.5X | 206/16.6X |
G12 | 39/23.0X | 101/14.0X | 30/21.3X | 96/18.3X | 46/29.1X | 130/18.9X | 121/19.5X | 208/15.0X |